Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,658,848 – 9,658,948 |
Length | 100 |
Max. P | 0.958644 |
Location | 9,658,848 – 9,658,948 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 86.76 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -26.52 |
Energy contribution | -25.78 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.19 |
Mean z-score | -2.14 |
Structure conservation index | 0.88 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9658848 100 - 22224390 GCUCUCAUGCC--GUUUUCAACGUGCUGAAUUUUUCGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGUACGAGUAUGAAAUGCAGCACACCUAUAUAG- ((......)).--.........((((((....((((((((...((((((.(((((((....)))))))))).))).))))))))..))))))..........- ( -30.50) >DroSim_CAF1 8908 99 - 1 GCUCUCAUGCC--GCUUUCAACGUGCUGAAUU-UUCGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGUACGAGUAUGAAAUGCAGCGCACCUAUAUAG- ((......)).--.........((((((...(-(((((((...((((((.(((((((....)))))))))).))).))))))))..))))))..........- ( -30.80) >DroEre_CAF1 1426 102 - 1 GCGCUCUUGCCUCUUUUUCAACGUGCUGCAUU-UUGGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGCACGGGUAUGAAAUGCAGCGCACCUAUAUACA ..((....))............((((((((((-(((.(((..(((((((.(((((((....)))))))))).))))))))))))))))))))........... ( -34.20) >DroYak_CAF1 7834 98 - 1 --GCUCUA--UGCUUUUUCAACGUGCUGAAUU-UUCGUGCGGCCGACGGCUAUAUAGUUGUCUAUAUAUUGCACGAGUAUGAAAUGCAGUGCACCUAUACAGU --((....--.)).........(..(((...(-(((((((((((...))))((((((....)))))).........))))))))..)))..)........... ( -25.50) >consensus GCGCUCAUGCC__GUUUUCAACGUGCUGAAUU_UUCGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGCACGAGUAUGAAAUGCAGCGCACCUAUAUAG_ ......................((((((.(((.(((((((((((...)))(((((((....))))))).)))))))).....))).))))))........... (-26.52 = -25.78 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:32 2006