Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,658,398 – 9,658,511 |
Length | 113 |
Max. P | 0.536047 |
Location | 9,658,398 – 9,658,511 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -14.37 |
Energy contribution | -14.27 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.19 |
Mean z-score | -1.39 |
Structure conservation index | 0.73 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.536047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9658398 113 + 22224390 AAAAAACAAAAAUAGAAAAAAAAUGCAAUCAGAUUCCGUUUCAAAUUUGAUCAAAUUUGAAAUCAAAUGAAUGGCUGGCUAGUGAAUGGCAAUUGGUGGUUAAACACUGAACU ........................((..(((......(((((((((((....)))))))))))....)))...))..((((.....))))..(..(((......)))..)... ( -20.50) >DroSim_CAF1 8519 98 + 1 AAA---------------AAAAAUGAAAUCAGAUUCCGUUUCAAAUUUGAUCAAAUUUGAAAUCAAAUGAAUGGGUGGCUAGUGAAUGGCAAUUGGUGGUUAAACACUGAACU ...---------------..........(((((((..(((((((((((....)))))))))))..)))...((..((((((.(.(((....))).)))))))..))))))... ( -18.90) >DroEre_CAF1 1028 92 + 1 ------------------AAAA---GAAUCGCAUUCCGUUUCAAAUUUGAUUAAAUUGGAAGUCAAAUGACUGGGUGGCUGCUGAAUGUCAAUUGGUGGUUAAACACCGAACU ------------------....---((.(((((..(((..(...((((((((........))))))))....)..))).))).))...))..((((((......))))))... ( -19.80) >consensus AAA_______________AAAAAUGAAAUCAGAUUCCGUUUCAAAUUUGAUCAAAUUUGAAAUCAAAUGAAUGGGUGGCUAGUGAAUGGCAAUUGGUGGUUAAACACUGAACU .............................(((...((((((...(((((((..........))))))))))))))))((((.....))))..((((((......))))))... (-14.37 = -14.27 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:32 2006