Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,658,256 – 9,658,361 |
Length | 105 |
Max. P | 0.527336 |
Location | 9,658,256 – 9,658,361 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.19 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -17.27 |
Energy contribution | -18.77 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.72 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9658256 105 + 22224390 CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUUUUUUCGGGCGACAGGGCCAUCUUCUUCAUUUGCAUUUCGAAACUCAAAUCGAUA .......(((((.........((((..(((((..(((((((((....)))))))))..)))))..))))..........((((.....)))).......))))). ( -29.80) >DroSim_CAF1 8383 101 + 1 CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUU-UCUCGGGCGACAGGGCCAUCU---UCAUUUGCAUUUUGAAACUCAAAUCGAUA .......(((((.........((((..(((((..(((.(((((....))))-))))..)))))..))))....---..........((((.....))))))))). ( -29.70) >DroEre_CAF1 908 83 + 1 CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAA-AGGAAAUCAGAGGG------------------CCAUCU---UCAUUUGCAUUUUGAAACUCAAAUCGAUA .......(((((((((.....))))....(((((-(.((....(((...------------------...)))---)).)))))).((((.....))))))))). ( -17.30) >DroYak_CAF1 7312 83 + 1 CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGUGGG-------------------CAUCU---UCAUUUGCAUUUGGAAACUCAAAUCGAUA .......(((((((((.....))))....((((((((((..((....))-------------------..)))---))..)))))...(....).....))))). ( -18.80) >consensus CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGG__________________CCAUCU___UCAUUUGCAUUUUGAAACUCAAAUCGAUA .......(((((((((.....))))....(((((...((....(((.((((((.((....)).)))))).)))...))..)))))..............))))). (-17.27 = -18.77 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:31 2006