Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,657,649 – 9,657,739 |
Length | 90 |
Max. P | 0.930570 |
Location | 9,657,649 – 9,657,739 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -20.60 |
Energy contribution | -20.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.04 |
Structure conservation index | 0.89 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9657649 90 + 22224390 CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACUGCAAGUUGGGCAAACAACAA (((((((..(((.((.((...........)))).)))....))))))).(.((((.(((((((((....))))))))).)))).)..... ( -26.80) >DroEre_CAF1 317 90 + 1 CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACUGCAAGUUGGGAAAACAACAA (((((((..(((.((.((...........)))).)))....)))))))........(((((((((....)))))))))............ ( -21.30) >DroYak_CAF1 6479 90 + 1 CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACAGCAAGUUGGGAAAACAACAA (((((((..(((.((.((...........)))).)))....))))))).(((((((.....))))....)))..((((......)))).. ( -21.10) >consensus CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACUGCAAGUUGGGAAAACAACAA (((((((..(((.((.((...........)))).)))....)))))))........((((((((......))))))))............ (-20.60 = -20.60 + -0.00)
Location | 9,657,649 – 9,657,739 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 98.52 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -25.37 |
Energy contribution | -25.37 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.37 |
Structure conservation index | 0.92 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9657649 90 - 22224390 UUGUUGUUUGCCCAACUUGCAGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG .....((((((..(((((((......)))))))..)))))).((((((((..(((((((((...........)).))))))))))))))) ( -31.90) >DroEre_CAF1 317 90 - 1 UUGUUGUUUUCCCAACUUGCAGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG .....((((.(..(((((((......)))))))..).)))).((((((((..(((((((((...........)).))))))))))))))) ( -25.30) >DroYak_CAF1 6479 90 - 1 UUGUUGUUUUCCCAACUUGCUGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG .....((((.(..(((((((......)))))))..).)))).((((((((..(((((((((...........)).))))))))))))))) ( -25.50) >consensus UUGUUGUUUUCCCAACUUGCAGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG .....((((.(..(((((((......)))))))..).)))).((((((((..(((((((((...........)).))))))))))))))) (-25.37 = -25.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:30 2006