Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,656,348 – 9,656,465 |
Length | 117 |
Max. P | 0.791656 |
Location | 9,656,348 – 9,656,465 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -29.62 |
Energy contribution | -29.75 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.69 |
Structure conservation index | 0.89 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9656348 117 - 22224390 AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG---ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA ........(((((.....))))).((((((((((((.....))))((.((((....((....))..(((.....)))---...)))).)).......((....)).)).))))))..... ( -33.60) >DroAna_CAF1 21244 116 - 1 UACAACAAUG-CCACGGUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG---ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA ......((((-(...((.(((..(((((((.(((((.....))))))).)))....((....))..))...)))))(---(.....)))))))((((((((.((....))..)))))))) ( -31.20) >DroSim_CAF1 5802 117 - 1 AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG---ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA ........(((((.....))))).((((((((((((.....))))((.((((....((....))..(((.....)))---...)))).)).......((....)).)).))))))..... ( -33.60) >DroYak_CAF1 5205 120 - 1 AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCAGUGGCAGCAACUUCGCAUUUUUAUGCCAGCAAACGUCAGCCAUAAA .......((((((...((((((((.((((.((((((.....))))...........((....)).))..)))).))))).........((((....)))).......))).))))))... ( -34.30) >consensus AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG___ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA ........(((((.....))))).((((((((((((.....))))((.((((....((....))..(((.....)))......)))).)).......((....)).)).))))))..... (-29.62 = -29.75 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006