Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,656,173 – 9,656,285 |
Length | 112 |
Max. P | 0.790667 |
Location | 9,656,173 – 9,656,285 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.49 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -19.80 |
Energy contribution | -19.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.74 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9656173 112 + 22224390 ----UA-UUUCACUCACUCUGCG--GCGCUCUCUUUCAAGCACUUUAGUGCAGGCUAAUUACAAAAAGUGAAAACACAAUUCAUUUUGCUUGUGGUUUAUGCGCUUUCCUUGCUGCCGC- ----..-.............(((--(((((........))).....((((((....((((((((((((((((.......))))))))..))))))))..)))))).........)))))- ( -29.20) >DroAna_CAF1 21040 108 + 1 UGAAGAGGCCGCCUCCCU--------CGCACUC---GGAGCACUUUAGUGCAGGCUAAUUACAAAAAGUGAAAACACAAUUCAUUUUGCUUGUGGUUUAUGCGUUUUCUUUGCCGCCAC- .(((((.((.((((.((.--------.......---)).((((....)))))))).((((((((((((((((.......))))))))..))))))))...)).)))))...........- ( -27.40) >DroSim_CAF1 5625 114 + 1 ----UA-UCUCACUCACACUGCGCUGCGCUCUCUUUCGAGCACUUUAGUGCAGGCUAAUUACAAAAAGUGAAAACACAAUUCAUUUUGCUUGUGGUUUAUGCGCUUUCCUUGCUGCCAC- ----..-...........((((((((.((((......))))....))))))))((.((((((((((((((((.......))))))))..))))))))...))((.......))......- ( -29.20) >DroYak_CAF1 5012 107 + 1 ----UA-UCUCACUCACU--------CGCUCUCUUUCAAGCACUUUAGUGCAGGCUAAUUACAAAAAGUGAAAACACAAUUCAUUUUGCUUGUGGUUUAUGCGAUUUCCUUGCUGCCCCA ----..-...........--------.............((((....)))).(((.((((((((((((((((.......))))))))..))))))))...((((.....)))).)))... ( -20.60) >consensus ____UA_UCUCACUCACU________CGCUCUCUUUCAAGCACUUUAGUGCAGGCUAAUUACAAAAAGUGAAAACACAAUUCAUUUUGCUUGUGGUUUAUGCGCUUUCCUUGCUGCCAC_ .......................................((((....)))).(((.((((((((((((((((.......))))))))..))))))))...(((.......))).)))... (-19.80 = -19.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:27 2006