Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,101,145 – 1,101,247 |
Length | 102 |
Max. P | 0.684954 |
Location | 1,101,145 – 1,101,247 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 86.77 |
Mean single sequence MFE | -16.72 |
Consensus MFE | -12.40 |
Energy contribution | -13.02 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.14 |
Mean z-score | -1.67 |
Structure conservation index | 0.74 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1101145 102 - 22224390 CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCACAACACAAUGAGUGCCUAAU---------UGUACGAUAUUCACGCAUGCAACCGACA .......(((.......((((.(((((.....((....))........((((((........))))))......---------.....)))))....))))......))). ( -14.32) >DroSec_CAF1 7108 107 - 1 CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA----AGAAUGCGUGCCUAAUUGUCCCAAUUGUACGAUAUUCACGCAUACAACCGACA .......(((........((((((....................))))))....----.(.(((((((....(((((.(.....).)))))...))))))).)....))). ( -16.25) >DroEre_CAF1 7137 105 - 1 CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA----AGAAUGCGUGCCUAAUUGUCCCAA--AUACGAUUUUUGCGCAUCUAACCGACA .......(((........((((((....................))))))....----(((.((((((...((((((.....--..))))))..)))))))))....))). ( -15.85) >DroYak_CAF1 7169 105 - 1 CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA----AGAACGCGUGCCUAAUUGUCCCAA--AUACGAUUUCUGCGCGUGUCACCGACA .......(((........((((((....................))))))....----.((.(((((((..((((((.....--..))))))...)))))))))...))). ( -20.45) >consensus CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA____AGAAUGCGUGCCUAAUUGUCCCAA__AUACGAUAUUCACGCAUGCAACCGACA .......(((........((((((....................))))))...........(((((((...((((((.........))))))..)))))))......))). (-12.40 = -13.02 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:33 2006