Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 135,552 – 135,655 |
Length | 103 |
Max. P | 0.617629 |
Location | 135,552 – 135,655 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 87.67 |
Mean single sequence MFE | -31.56 |
Consensus MFE | -20.70 |
Energy contribution | -20.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.30 |
Structure conservation index | 0.66 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 135552 103 - 22224390 CCAAACAGGUAUCACUUCCA---------AUUGUGUGCACGACAGC------ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUGAUGCAUCUGUGUCUGUGUGAUUCU ..(((((.((((..((((((---------((.((((((......))------))))(((.........)))))))))))..)))).)))))..(((((....)))))........... ( -34.30) >DroSec_CAF1 7717 103 - 1 CGAAACAGGUAUCACUUCCA---------AUUGUGAGCACGACAGC------ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUAAUGCAUCUGUGUCUGUGUGAUUCU .((((((.((((..((((((---------((.(((.((......))------.)))(((.........)))))))))))..)))).))))))..(((((........)))))...... ( -28.40) >DroSim_CAF1 7496 103 - 1 CGAAACAGGUAUCACUUCCA---------AUUGUGAGCACGACAGC------ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUAAUGCAUCUGUGUCUGUGUGAUUCU .((((((.((((..((((((---------((.(((.((......))------.)))(((.........)))))))))))..)))).))))))..(((((........)))))...... ( -28.40) >DroEre_CAF1 6764 100 - 1 CGAAGCAGGUAUCAAUUCCA---------AUUGUGAGCACGACAGC------ACACGCAUUUCCAAUUUGUAUUGGAAGGUAUGUGUGC---UAAUGCAUCUGUGUCUGUGUGAUUCU .((.((((((..((((....---------))))...(((....(((------(((((..((((((((....))))))))...)))))))---)..))))))))).))........... ( -29.60) >DroYak_CAF1 7016 115 - 1 CGAAACAGGUAUCAAUUCCAAUUGUUCCAAUUGUGAGCACGACAGCACAAGCACACGCAUUUCCAAUUCCUAUUGGAAGGUAUGUGUGU---UAGUGCAUCUGUGUCUGUGUGAUUCU .((.((((((.....(((((((((...)))))).))).......((((.((((((((..((((((((....))))))))...)))))))---).)))))))))).))........... ( -37.10) >consensus CGAAACAGGUAUCACUUCCA_________AUUGUGAGCACGACAGC______ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUAAUGCAUCUGUGUCUGUGUGAUUCU .((.((((((....................((((....))))..((......((((((((((((.((....)).))))...)))))))).......)))))))).))........... (-20.70 = -20.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:58 2006