Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,653,181 – 9,653,275 |
Length | 94 |
Max. P | 0.706758 |
Location | 9,653,181 – 9,653,275 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -17.30 |
Energy contribution | -17.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.61 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9653181 94 - 22224390 UUUCGUGCUAGCCACGUUCCACAGAGCC----GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGG----------------------CAACGGCAG .....((((.(((.((((...(((.(((----.((((((....))))))....)))))).......(((....)))......)))).))----------------------)...)))). ( -26.00) >DroAna_CAF1 20404 96 - 1 UUUCGUGCCGGCCACGUCCCA--GGGCCCAGAGUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACACAACGA----------------------CUCUGGCAG .....((((((...(((....--(((((.((..((((((....)))))).)).)))))........(((....))).........))).----------------------..)))))). ( -25.90) >DroSim_CAF1 3911 94 - 1 UUUCGUGCUAGCCACGUUCCACAGAGCC----GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGG----------------------CAACGGCAG .....((((.(((.((((...(((.(((----.((((((....))))))....)))))).......(((....)))......)))).))----------------------)...)))). ( -26.00) >DroYak_CAF1 3642 116 - 1 UUUCGUGCUAGCCACGUUCCACAGAGCC----GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGAAAACGGGACAACGGCAGCGGGAAAACGGCAG ((((.((((.(((..(((((.(((.(((----.((((((....))))))....)))))).......(((....))).................)))))...))))))).))))....... ( -35.00) >consensus UUUCGUGCUAGCCACGUUCCACAGAGCC____GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGA______________________CAACGGCAG ..........(((........(((.(((.....((((((....))))))....)))))).......(((....))).......................................))).. (-17.30 = -17.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:26 2006