Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,652,384 – 9,652,503 |
Length | 119 |
Max. P | 0.646047 |
Location | 9,652,384 – 9,652,503 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.86 |
Mean single sequence MFE | -22.47 |
Consensus MFE | -16.12 |
Energy contribution | -16.90 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.09 |
Mean z-score | -2.49 |
Structure conservation index | 0.72 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9652384 119 - 22224390 AGACAAACCAAUUUUGUAAGUAUGAAAUGUAUG-GCAAAUAAAUAAAAAUGUUUUAGUUGUGAAUACAUUUUAUGAAUAAAAUGAAAAUCGACAAUAGUCGAAAUUCAUAAAGUGCAACG .............(((((..((((((((((((.-((((..(((((....)))))...))))..))))))))))))......(((((..(((((....)))))..)))))....))))).. ( -26.80) >DroSim_CAF1 3121 119 - 1 AGGCAAACCAAUUUUGUAAAUUUGAAAUGUAUG-GCAAAUAAAUAAAAAUGUUUUAGUUCUGAAUACAUUUUAUGAAUAAAAUAAAAAUCGACAACAGUCGAAAUUCAUAAAGUGCAACG ..(((.....(((((((.....((((((((((.-.((((((((((....)))))..))).)).))))))))))...))))))).....(((((....)))))...........))).... ( -19.00) >DroYak_CAF1 2788 120 - 1 UCAGAAACCAAUUUUGUAAAUUUGUUAUGUAUGGGCAAAUAAAUAAAAAUGUUUUCGUUGUGCAUACAUAUUAGAAAUAAAAUAAAAAUGGACAACGAUCGAAAUUCAUAAAGUGCAACG .......(((.((((((........((((((((.((((..(((((....)))))...)))).))))))))(((....))).)))))).)))............................. ( -21.60) >consensus AGACAAACCAAUUUUGUAAAUUUGAAAUGUAUG_GCAAAUAAAUAAAAAUGUUUUAGUUGUGAAUACAUUUUAUGAAUAAAAUAAAAAUCGACAACAGUCGAAAUUCAUAAAGUGCAACG ..........(((((((...((((((((((((..((((..(((((....)))))...))))..)))))))))))).............(((((....))))).....)))))))...... (-16.12 = -16.90 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:25 2006