Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,643,167 – 9,643,266 |
Length | 99 |
Max. P | 0.788647 |
Location | 9,643,167 – 9,643,266 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.61 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -22.32 |
Energy contribution | -22.10 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.65 |
Structure conservation index | 0.98 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9643167 99 - 22224390 UCCCGAUUUUUCGCAACUAAUUACUUUUUCCGACGGCAGCCGUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAGUUUGUUGGCUUCGCUUCAACU ...(((....)))..................((.(((........(((((.(((....))).)))))((((((((......)))))))).))))).... ( -22.40) >DroSec_CAF1 18569 99 - 1 UCCCUAUUUUUCGCAACUAAUUACUUUUUCCGACGGCAGCCGUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAAUUCGUUGGCUUCGCUUCAACU ............((................((((....((((.(((.......))).))))...))))(((((((......)))))))..))....... ( -21.50) >DroEre_CAF1 20022 99 - 1 UACAGAUUUUUCUCAACUAAUUACUUUUUCCGACGGCAGCCUUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAGUUUGUUGGCUUCGCCUCAACU ...............................((.(((........(((((.(((....))).)))))((((((((......)))))))).))))).... ( -24.10) >consensus UCCCGAUUUUUCGCAACUAAUUACUUUUUCCGACGGCAGCCGUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAGUUUGUUGGCUUCGCUUCAACU ...............................((.(((........(((((.(((....))).)))))((((((((......)))))))).))))).... (-22.32 = -22.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006