Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,640,493 – 9,640,594 |
Length | 101 |
Max. P | 0.668875 |
Location | 9,640,493 – 9,640,594 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -30.07 |
Consensus MFE | -17.59 |
Energy contribution | -16.93 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.21 |
Mean z-score | -3.26 |
Structure conservation index | 0.59 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9640493 101 - 22224390 -----ACUACAUAGAAAUAUAUACAUAUAUAUGUGUGUGUGUGUUUCGAGAGCUGAAAAGUGGGCGUUAAGUUGGCUAAUGAAAAUUGCCAGGCAACGUUGAAAAG -----........(((((((((((((((....)))))))))))))))....(((....))).((((((...(((((.(((....))))))))..))))))...... ( -31.10) >DroSec_CAF1 15887 104 - 1 UCUGCACUACAUCGAAAUAUAUACAUAUGUAUGUAU--GUGUGUUUCGAGAGCUGAAAAGUGGGCGUUAAGUUGGCUAAUGAAAAUUGCCAGGCAACGCUGAAAAG ...........(((((..((((((((((....))))--)))))))))))..(((....))).((((((...(((((.(((....))))))))..))))))...... ( -30.20) >DroEre_CAF1 17387 103 - 1 UCUGCACUGCAUAGACA-ACAUACAUACAUACAUGU--GUAUGUUUCGAGAGCUGAAAAGUGGGCGUUAGGUUGCCUAAUGAAAAUUACCAGGCAACGCUGAAAAG ((.((...((...((.(-(((((((((......)))--)))))))))....(((....)))..)).....((((((((((....)))...))))))))).)).... ( -28.90) >consensus UCUGCACUACAUAGAAAUAUAUACAUAUAUAUGUGU__GUGUGUUUCGAGAGCUGAAAAGUGGGCGUUAAGUUGGCUAAUGAAAAUUGCCAGGCAACGCUGAAAAG .............((...((((((..(((....)))..)))))).))....(((....))).((((((...(((((.(((....))))))))..))))))...... (-17.59 = -16.93 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:23 2006