Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,632,427 – 9,632,541 |
Length | 114 |
Max. P | 0.520805 |
Location | 9,632,427 – 9,632,541 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -34.35 |
Consensus MFE | -27.56 |
Energy contribution | -27.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.80 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9632427 114 + 22224390 GAAUUUCCCAAGGACGGGGGGCAAGGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..(((((((.....((..((((...(((((((((.....)))))))))..((((....))))...........))))..)).........(......))))))))......... ( -38.70) >DroPse_CAF1 37024 95 + 1 ------------GGCAUGGGGCA-GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGA---CGACAGGGAAGAGAGGGAGUAAAACC--- ------------......((((.-.(((((((((.....)))))))))..((((....))))...........)))).....---..............((........))--- ( -27.00) >DroSec_CAF1 8084 113 + 1 GAAUUUCACAAGGACGGGGGGCA-GGUGCCGUGCGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..............((..((((.-.(((((((((.....)))))))))..((((....))))...........))))..))......((((...((.(....).))...)))). ( -36.40) >DroEre_CAF1 8067 113 + 1 GAGUUUCCCAAGGACGAGGGGCA-GGUGCCGUGCGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGAUGACAGGGACAACGGGAGAUGACACUGGG ..(((((((.....((..((((.-.(((((((((.....)))))))))..((((....))))...........))))..)).........(......))))))))......... ( -38.30) >DroYak_CAF1 9698 113 + 1 GAAUUUCCCAAGGACGGGGGGCA-GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..(((((((.....((..((((.-.(((((((((.....)))))))))..((((....))))...........))))..)).........(......))))))))......... ( -38.70) >DroPer_CAF1 36236 95 + 1 ------------GGCAUGGGGCA-GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGA---CGACAGGGAAGAGAGGGAGUAAAACC--- ------------......((((.-.(((((((((.....)))))))))..((((....))))...........)))).....---..............((........))--- ( -27.00) >consensus GAAUUUCCCAAGGACGGGGGGCA_GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..............((..((((...(((((((((.....)))))))))..((((....))))...........))))..))................................. (-27.56 = -27.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:20 2006