Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,621,120 – 9,621,227 |
Length | 107 |
Max. P | 0.533553 |
Location | 9,621,120 – 9,621,227 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -15.38 |
Consensus MFE | -12.00 |
Energy contribution | -11.96 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.54 |
Structure conservation index | 0.78 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9621120 107 - 22224390 AAAUUACAUGUUGCAGGCCACCGAAAGAAAUUAUGAAUUAUUACGGAAAAUAAGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA ......(((((((((..((.((........((((...(((((......)))))..--------..))))..........))..))....)))).)))))................ ( -16.07) >DroSec_CAF1 81577 107 - 1 AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACAGAAAAUAAGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA ......(((((((((..((.((........((((...(((((......)))))..--------..))))..........))..))....)))).)))))................ ( -16.07) >DroSim_CAF1 67183 107 - 1 AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACGGAAAAUAAGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA ......(((((((((..((.((........((((...(((((......)))))..--------..))))..........))..))....)))).)))))................ ( -16.07) >DroEre_CAF1 86125 107 - 1 AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACGGAAAAUACGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGAAGGCAUGGAAACUGAGACAAGGA ......(.(((..(((.(((((..((....))...........((.......)).--------..............................))..)))...)))..))).).. ( -11.50) >DroYak_CAF1 85964 115 - 1 AAAUUACAUGUUGCAGGCCACCGAAAGAAAUUAUGAAUUAUUACGGAAAAUACGAAUAUAAGAAAAUAAGAAAAGCAACGGAGGGAAAAUGCAUGCAUGCCAACUAAGACAAGGA ......(((((((((..((.(((.......((((...((((..((.......))...))))....)))).........)))..))....)))).)))))................ ( -17.19) >consensus AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACGGAAAAUAAGA________AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA ......(((((((((..((.((..((....))......((((......))))...........................))..))....)))).)))))................ (-12.00 = -11.96 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:14 2006