Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,099,903 – 1,100,015 |
Length | 112 |
Max. P | 0.695263 |
Location | 1,099,903 – 1,100,015 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -17.20 |
Consensus MFE | -11.96 |
Energy contribution | -12.53 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.81 |
Structure conservation index | 0.70 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1099903 112 + 22224390 UCACAUCGUUAGUCAGCUAGAUCUAUUUCUCGUAUAGUUUUGCUCUGGUCAAAAUUACACAAAUAUCAUCUGG-----ACUAUCCCGACACUUUUUUUUUUAGUAUUAUUAUUUCUU .....(((.(((((...(((((.(((((...((.(((((((((....).)))))))).)))))))..))))))-----))))...)))............................. ( -14.80) >DroSec_CAF1 5838 110 + 1 UCACAUCGUUAGUCAGCUAGAUCUAUUUCUCGUGUAGUUUUGCUCUGGUCAAAAUUACACAAAUAUCAACUAG-----ACUAUCCCGACACUUUU--UUUUAGUAUUAUUAUUUCUU .....(((.(((((....(((......))).((((((((((((....).)))))))))))............)-----))))...))).......--.................... ( -20.10) >DroEre_CAF1 5912 104 + 1 UCACAUCGUUAGUCAACUAGAUCUAUUUUUCGUAUAGUUUUGCUCUGGUCAAAAUUACACAAAUAACAUCUGG-----ACCAUCUCGACACAUUC--UUU------UAUUAUUUCUU .......(((((....((((((.(((((...((.(((((((((....).)))))))).)))))))..))))))-----.....)).)))......--...------........... ( -12.50) >DroYak_CAF1 5900 109 + 1 UCACAUCGCUAGCCAGCUAGAUCUAUUUUUCGUAUAGUUUUGCUCUGGUCAAAAUUACACAAAUACCAUCUGGACUGGACUAUCUCGACACAUUC--UUU------CAUUAUUUCUU .....(((.(((((((((((((.(((((...((.(((((((((....).)))))))).)))))))..)))))).)))).)))...))).......--...------........... ( -21.40) >consensus UCACAUCGUUAGUCAGCUAGAUCUAUUUCUCGUAUAGUUUUGCUCUGGUCAAAAUUACACAAAUAUCAUCUGG_____ACUAUCCCGACACAUUC__UUU______UAUUAUUUCUU .....(((.((((...((((((.(((((...((.(((((((((....).)))))))).)))))))..)))))).....))))...)))............................. (-11.96 = -12.53 + 0.56)
Location | 1,099,903 – 1,100,015 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -15.22 |
Energy contribution | -14.41 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.19 |
Mean z-score | -1.64 |
Structure conservation index | 0.72 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1099903 112 - 22224390 AAGAAAUAAUAAUACUAAAAAAAAAAGUGUCGGGAUAGU-----CCAGAUGAUAUUUGUGUAAUUUUGACCAGAGCAAAACUAUACGAGAAAUAGAUCUAGCUGACUAACGAUGUGA ..........................(..(((...((((-----(.((..(((.((((((((.(((((.......))))).))))))))......)))...))))))).)))..).. ( -19.20) >DroSec_CAF1 5838 110 - 1 AAGAAAUAAUAAUACUAAAA--AAAAGUGUCGGGAUAGU-----CUAGUUGAUAUUUGUGUAAUUUUGACCAGAGCAAAACUACACGAGAAAUAGAUCUAGCUGACUAACGAUGUGA ....................--....(..(((...((((-----(.(((((((.((((((((.(((((.......))))).))))))))......))).))))))))).)))..).. ( -23.00) >DroEre_CAF1 5912 104 - 1 AAGAAAUAAUA------AAA--GAAUGUGUCGAGAUGGU-----CCAGAUGUUAUUUGUGUAAUUUUGACCAGAGCAAAACUAUACGAAAAAUAGAUCUAGUUGACUAACGAUGUGA ...........------...--....(..(((...((((-----(.(((((((.((((((((.(((((.......))))).)))))))).)))..))))....))))).)))..).. ( -18.00) >DroYak_CAF1 5900 109 - 1 AAGAAAUAAUG------AAA--GAAUGUGUCGAGAUAGUCCAGUCCAGAUGGUAUUUGUGUAAUUUUGACCAGAGCAAAACUAUACGAAAAAUAGAUCUAGCUGGCUAGCGAUGUGA ...........------...--....(..(((...(((.(((((..((((.((.((((((((.(((((.......))))).))))))))..))..)))).)))))))).)))..).. ( -24.70) >consensus AAGAAAUAAUA______AAA__AAAAGUGUCGAGAUAGU_____CCAGAUGAUAUUUGUGUAAUUUUGACCAGAGCAAAACUAUACGAAAAAUAGAUCUAGCUGACUAACGAUGUGA ..........................(..(((...((((...............((((((((.(((((.......))))).))))))))...............)))).)))..).. (-15.22 = -14.41 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:32 2006