Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,612,758 – 9,612,864 |
Length | 106 |
Max. P | 0.931874 |
Location | 9,612,758 – 9,612,864 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -37.17 |
Consensus MFE | -35.97 |
Energy contribution | -36.23 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.97 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9612758 106 + 22224390 CUUUUCUUGCUGUGCAGCCAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGAC-------AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG (((((((((((((.((((....((.(((((((.......)).))))))).......-------...((......))...)))).)))))))))...))))............. ( -37.70) >DroSec_CAF1 71538 106 + 1 AUUUUCUUGCUGUGCAGCCAAAGGGCCGGGCCAUUAACAGGACCUGGCCAAAGGAC-------AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG ....(((((((((.((((.....(((((((((.......)).))))))).......-------...((......))...)))).))))))))).................... ( -40.70) >DroSim_CAF1 58934 106 + 1 AUUUUCUUGCUGUGCAGCCAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGAC-------AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG ....(((((((((.((((....((.(((((((.......)).))))))).......-------...((......))...)))).))))))))).................... ( -37.10) >DroYak_CAF1 76247 113 + 1 AUUUUCUUGCUGUGCAGCCAGAGGACCCGGCCAUUAACAGGACCUGGCCAAAGGACAAAGGACAAAGGACAUGCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAACAGGAG ....(((((((((.((((....((.((.((((.......)).)).)))).................((......))...)))).))))))))).................... ( -33.20) >consensus AUUUUCUUGCUGUGCAGCCAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGAC_______AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG ....(((((((((.((((....((.(((((((.......)).))))))).................((......))...)))).))))))))).................... (-35.97 = -36.23 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:03 2006