Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,611,432 – 9,611,522 |
Length | 90 |
Max. P | 0.989243 |
Location | 9,611,432 – 9,611,522 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -17.84 |
Consensus MFE | -15.92 |
Energy contribution | -15.96 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.83 |
Structure conservation index | 0.89 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9611432 90 - 22224390 ACAUCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG ..((((.(((((((..(((((......)))))...))))))).((.......))...........................))))..... ( -17.10) >DroSec_CAF1 70113 90 - 1 ACAGCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG ...((..(((((((..(((((......)))))...))))))).))............................................. ( -18.00) >DroSim_CAF1 57627 90 - 1 ACAGCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG ...((..(((((((..(((((......)))))...))))))).))............................................. ( -18.00) >DroEre_CAF1 74987 89 - 1 ACAGCAAGUGGCACGUUGCACAGCAAAGUGCGUGUGUGUCGCAGCAUUA-AAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAAA ...((..(((((((..(((((......)))))...))))))).))....-........................................ ( -18.00) >DroYak_CAF1 74425 90 - 1 ACAGCAAGUGGCACGUUGCACAUCAAAGUGCGUGCGUCUCGCCGCAUUAAAAGUAGACAAAUAGUACAAUAAUAUAUUAAAUGGUAAAAA ...((..((((((((((((((......))))).))))...)))))............((..(((((........)))))..))))..... ( -18.10) >consensus ACAGCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG .......((((((((((((((......))))).)))))))))................................................ (-15.92 = -15.96 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:02 2006