Locus 3583

Sequence ID	X_DroMel_CAF1
Location	9,608,775 – 9,608,884
Length	109
Max. P	0.570588

overview

Window 4

Location	9,608,775 – 9,608,884
Length	109
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	92.10
Mean single sequence MFE	-25.37
Consensus MFE	-17.63
Energy contribution	-18.69
Covariance contribution	1.06
Combinations/Pair	1.12
Mean z-score	-3.18
Structure conservation index	0.69
SVM decision value	0.07
SVM RNA-class probability	0.570588
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9608775 109 + 22224390
AAGAAAUAUUAAAAAGGACACACAGAUUC-CUUUUGCUGGCCGCACAAUAGACACUGGCCAUAAAUGGCCAGGCAAAAAGUG-----CCAAAGAGGAGAAUAAUAAAAAGUUACA
......(((((....(......)...(((-(((((..((((.............(((((((....)))))))((.....)))-----)))))))))))..))))).......... ( -24.90)
>DroSec_CAF1 67434 109 + 1
AAGAAAUAUUAAAAAGGACAUACAGAUUCUCCUCUGCUGGCCGCACAAUAGACA-UGGCCAUAAAUGGCCAGGCAAAAAGUG-----CCAAAGAUGAGAAUAAUAAAAAGUUACA
................(((......((((((.(((..((((.((..........-((((((....))))))........)))-----))).))).))))))........)))... ( -24.91)
>DroSim_CAF1 54985 109 + 1
AAGAAAUAUUAAAAAGGACAUACAGAUUCUCCUCUGCUGGCCGCACAAUAGACA-UGGCCAUAAAUGGCCAGGCAAAAAGUG-----CCAAAGAUGAGAAUAAUAAAAAGUUACA
................(((......((((((.(((..((((.((..........-((((((....))))))........)))-----))).))).))))))........)))... ( -24.91)
>DroYak_CAF1 71576 112 + 1
AAGAAAUAUUAAAAAGGACAUACAGAUUC--CUCUGCUGGCCGCACAAUAGACA-CGGCCAUAAAUGGCCAGGCAAAAAGUGAGAGGCAAGAGGGGAAAAUAAUAAAAAGUUACA
......(((((....(......)...(((--((((.((.(((.(((........-.(((((....))))).........)))...))).)))))))))..))))).......... ( -26.77)
>consensus
AAGAAAUAUUAAAAAGGACAUACAGAUUC_CCUCUGCUGGCCGCACAAUAGACA_UGGCCAUAAAUGGCCAGGCAAAAAGUG_____CCAAAGAGGAGAAUAAUAAAAAGUUACA
................(((......(((((((((((((.(((((......).)...(((((....))))).)))....)))..........))))))))))........)))... (-17.63 = -18.69 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:00 2006