Locus 3582

Sequence ID X_DroMel_CAF1
Location 9,607,708 – 9,607,824
Length 116
Max. P 0.764269
window5863

overview

Window 3

Location 9,607,708 – 9,607,824
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.59
Mean single sequence MFE -28.86
Consensus MFE -24.07
Energy contribution -24.35
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.83
SVM decision value 0.51
SVM RNA-class probability 0.764269
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9607708 116 - 22224390
AUUAAUGCUAAA---UGGAUUAUGUCAAAUUGCGUAAAUGCCACGGGGUUUCUUUUUUUUCCCCCCCCUUCGGCU-CUCAUUGUCCUCUGUGUGACUGGCAAAAUUCAUUUACUGCAGUU
.....(((((((---((((((.(((((............(((..((((................))))...))).-......((((.....).)))))))).))))))))))..)))... ( -27.39)
>DroSec_CAF1 66356 113 - 1
AUUAAUGCUAAAUAAUGGAUUAUGUCAAAUUGCGUAAAUGCCACGGGGU-UCUUUUUUU-----CCCCUGCGGCU-CUCAUUGUCCUCGGUGUGACUGGCAAAAUUCAAUUACUGCAGUU
.....(((.......((((((.(((((............(((.(((((.-.........-----.))))).)))(-(.(((((....))))).)).))))).))))))......)))... ( -28.92)
>DroSim_CAF1 53539 111 - 1
AUUAAUGCUAAA---UGGAUUAUGUCAAAUUGCGUAAAUGCCACGGGGUUUCUUUUUUU-----CCCCUGCGGCU-CUCAUUGUCCUCUGUGUGACUGGCAAAAUUCAAUUACUGCAGUU
.....((((((.---((((((.(((((............(((.(((((...........-----.))))).))).-......((((.....).)))))))).)))))).)))..)))... ( -26.90)
>DroEre_CAF1 71236 110 - 1
AUUAAUGCUAAA---UGGAUUACGUCAAAUUGCGUAAAUGCCACGGGGUCUCG--UAUG-----CCCCUAAGGGAAUCUAUUGUCCUCCGCGUGACUGGCGAAAUUCAAUUACUGCAGUU
.....((((((.---((((((.(((((..(..(((.........(((((....--...)-----))))...((((........))))..)))..).))))).)))))).)))..)))... ( -28.90)
>DroYak_CAF1 70482 109 - 1
AUUAAUGCUAAA---UGGAUUAUGUCAAAUUGCGUAAAUGCCACGGGGUUCUU--UUUG-----CCCCUGCGGCU-CACAUUGUCCUCUGUGUGACUGGCAAAAUUCAAUUACCGCAGUC
.....((((((.---((((((.(((((............(((.((((((....--...)-----)))).).)))(-(((((........)))))).))))).)))))).)))..)))... ( -32.20)
>consensus
AUUAAUGCUAAA___UGGAUUAUGUCAAAUUGCGUAAAUGCCACGGGGUUUCUUUUUUU_____CCCCUGCGGCU_CUCAUUGUCCUCUGUGUGACUGGCAAAAUUCAAUUACUGCAGUU
.....(((.......((((((.(((((............(((.(((((.................))))).)))........((((.....).)))))))).))))))......)))... (-24.07 = -24.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:59 2006