Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,607,126 – 9,607,243 |
Length | 117 |
Max. P | 0.844285 |
Location | 9,607,126 – 9,607,243 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.70 |
Mean single sequence MFE | -35.64 |
Consensus MFE | -31.66 |
Energy contribution | -31.30 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.89 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9607126 117 - 22224390 UUAAUGGCGCCACCA---UCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCCUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA ....(((((((....---....(((....)))..((((.((((((.((.(((((....)))))...)).)))))))))))))..((((((..((............)).)))))))))). ( -43.00) >DroSec_CAF1 65776 120 - 1 UUAAUGACACCACCACUACCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCUUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA ......................(((....)))..((((.((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. ( -33.90) >DroSim_CAF1 53012 120 - 1 UUAAUGACACCACCACUACCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCUUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA ......................(((....)))..((((.((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. ( -33.90) >DroEre_CAF1 70656 117 - 1 UUAAUAACACGACCA---CCACCUGAAAUCAGGUGACCAGGUGGGCGGUUUGGAUUUUUCCAAGGGCUUUUCGCCGCUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA .........((.(((---(((((((....))))).....))))).)).((((((....))))))(((.....)))..(((((..((((((..((............)).))))))))))) ( -35.70) >DroYak_CAF1 69844 117 - 1 UUAAUAACACGACCA---GCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGACUUUUCCAAGGGCUUUUCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA ..........((((.---.((.(((....))).))....((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. ( -31.70) >consensus UUAAUGACACCACCA___CCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCUUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA ......................(((....)))..((((.((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. (-31.66 = -31.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:58 2006