Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,604,424 – 9,604,536 |
Length | 112 |
Max. P | 0.984669 |
Location | 9,604,424 – 9,604,536 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.06 |
Mean single sequence MFE | -24.43 |
Consensus MFE | -25.09 |
Energy contribution | -25.12 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -0.81 |
Structure conservation index | 1.03 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9604424 112 + 22224390 CAUUUGCAGUCAUUACGAAUUCCCCGCAGGUU-UCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGUCGCUUGGCC-------CAGCCACAUGACAUAGC ........(((((............((.((..-..)).))...((((......((..(((.....(((.(((((((....))))))).))).))).-------)))))).)))))..... ( -24.00) >DroSec_CAF1 63045 112 + 1 CAUUUGCAGUCAUUACGAAUUCCCCGCAGGUU-UCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGUCGCUUGGCC-------CAGCCACAUGACAUAGC ........(((((............((.((..-..)).))...((((......((..(((.....(((.(((((((....))))))).))).))).-------)))))).)))))..... ( -24.00) >DroSim_CAF1 50312 112 + 1 CAUUUGCAGUCAUUACGAAUUCCCCGCAGGUU-UCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGUCGCUUGGCC-------CAGCCACAUGACAUAGC ........(((((............((.((..-..)).))...((((......((..(((.....(((.(((((((....))))))).))).))).-------)))))).)))))..... ( -24.00) >DroEre_CAF1 67945 112 + 1 CAUUUGCAGUCAUUACGAAUUCCCCGCAGGUU-UCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGUCGCUUGGCC-------CAGCCACAUGACAUAGC ........(((((............((.((..-..)).))...((((......((..(((.....(((.(((((((....))))))).))).))).-------)))))).)))))..... ( -24.00) >DroYak_CAF1 66951 112 + 1 CAUUUGCAGUCAUUACGAAUUCCCCGCAGGUU-UCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGUCGCUUGGCC-------CAGCCACAUGACAUAGC ........(((((............((.((..-..)).))...((((......((..(((.....(((.(((((((....))))))).))).))).-------)))))).)))))..... ( -24.00) >DroAna_CAF1 83407 119 + 1 CAUUUGCAGUCAUUAGAAAUUCCCCGCAGGUUUUCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGA-GCUUGGUCUCUGCCACUGCCACAUGACGCAGA ..(((((.(((((............(((((....((.(((....(((..(....)..)))..........((((((....)))))).-))).))..))))).........)))))))))) ( -26.60) >consensus CAUUUGCAGUCAUUACGAAUUCCCCGCAGGUU_UCCCAGCAAAUGGCCUCAAUUGUUGCCUUUUUAGCCACUAAUUGCUCAAUUAGUCGCUUGGCC_______CAGCCACAUGACAUAGC ........(((((............((.((.....)).))...((((..........(((.....(((.(((((((....))))))).))).)))..........)))).)))))..... (-25.09 = -25.12 + 0.03)
Location | 9,604,424 – 9,604,536 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.06 |
Mean single sequence MFE | -38.60 |
Consensus MFE | -32.35 |
Energy contribution | -33.02 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.99 |
Structure conservation index | 0.84 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9604424 112 - 22224390 GCUAUGUCAUGUGGCUG-------GGCCAAGCGACUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGA-AACCUGCGGGGAAUUCGUAAUGACUGCAAAUG ((...(((((...((..-------((((.(((.(((((((....))))))).))).....(....)......)))).(((((.((..-..)).)))))......)).))))).))..... ( -39.50) >DroSec_CAF1 63045 112 - 1 GCUAUGUCAUGUGGCUG-------GGCCAAGCGACUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGA-AACCUGCGGGGAAUUCGUAAUGACUGCAAAUG ((...(((((...((..-------((((.(((.(((((((....))))))).))).....(....)......)))).(((((.((..-..)).)))))......)).))))).))..... ( -39.50) >DroSim_CAF1 50312 112 - 1 GCUAUGUCAUGUGGCUG-------GGCCAAGCGACUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGA-AACCUGCGGGGAAUUCGUAAUGACUGCAAAUG ((...(((((...((..-------((((.(((.(((((((....))))))).))).....(....)......)))).(((((.((..-..)).)))))......)).))))).))..... ( -39.50) >DroEre_CAF1 67945 112 - 1 GCUAUGUCAUGUGGCUG-------GGCCAAGCGACUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGA-AACCUGCGGGGAAUUCGUAAUGACUGCAAAUG ((...(((((...((..-------((((.(((.(((((((....))))))).))).....(....)......)))).(((((.((..-..)).)))))......)).))))).))..... ( -39.50) >DroYak_CAF1 66951 112 - 1 GCUAUGUCAUGUGGCUG-------GGCCAAGCGACUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGA-AACCUGCGGGGAAUUCGUAAUGACUGCAAAUG ((...(((((...((..-------((((.(((.(((((((....))))))).))).....(....)......)))).(((((.((..-..)).)))))......)).))))).))..... ( -39.50) >DroAna_CAF1 83407 119 - 1 UCUGCGUCAUGUGGCAGUGGCAGAGACCAAGC-UCUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGAAAACCUGCGGGGAAUUUCUAAUGACUGCAAAUG ..((((((((..(((((((((.........((-((.....))))..(((((.(((.....)))....))))).)))).))))).(((((.((....))...))))).))))).))).... ( -34.10) >consensus GCUAUGUCAUGUGGCUG_______GGCCAAGCGACUAAUUGAGCAAUUAGUGGCUAAAAAGGCAACAAUUGAGGCCAUUUGCUGGGA_AACCUGCGGGGAAUUCGUAAUGACUGCAAAUG ((...(((((((((((.........(((.(((.(((((((....))))))).))).....))).........))))))((((.((.....)).))))..........))))).))..... (-32.35 = -33.02 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:57 2006