Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,598,178 – 9,598,278 |
Length | 100 |
Max. P | 0.868700 |
Location | 9,598,178 – 9,598,278 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.01 |
Mean single sequence MFE | -25.85 |
Consensus MFE | -18.52 |
Energy contribution | -18.72 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.26 |
Mean z-score | -1.42 |
Structure conservation index | 0.72 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9598178 100 + 22224390 CAUGUUAUUGAUAUUGAA--------AUAU---AAUC-CGUUUCCAUCCUUUCAGGAUCAUCCCAGCUUGAGAGGAACUCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG .......(((.(((((..--------....---....-........((((((((((..........)))))))))).....((.((((.....)))))).)))))))).... ( -25.50) >DroSec_CAF1 56847 83 + 1 -----------------A--------AUAU---AAUC-CGUUUGUAUCCUUUCAGGAUCAUCCCAGCUUGAGAGGAACUCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG -----------------.--------....---....-.(((.((.((((((((((..........))))))))))(((..((.((((.....))))))..))))))))... ( -24.80) >DroSim_CAF1 43350 83 + 1 -----------------A--------AUAU---AAUC-CGUUUGUAUCCUUUCAGGAUCAUCCCAGCUUGAGAGGAACUCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG -----------------.--------....---....-.(((.((.((((((((((..........))))))))))(((..((.((((.....))))))..))))))))... ( -24.80) >DroEre_CAF1 61655 91 + 1 -----------------AUGCAUUGCUCAU---AAUA-CUUUGCUAUCCUUUCAGGAUCAUCCCAGUUUGAGGGGCACCCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG -----------------.(((((((.(((.---...(-((.....((((.....))))......))).)))(((....)))((.((((.....)))))).)))))))..... ( -27.40) >DroYak_CAF1 60256 91 + 1 -----------------AUGUCUAGCUCAU---AAUU-CUUUUGUAUCCUUACAGGAUCAUCCCAGCUUGAGGGGAACUCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG -----------------(((.(((((....---....-....((((....))))(((...((((........))))..)))))))).)))(((((....)))))........ ( -24.30) >DroMoj_CAF1 82466 88 + 1 ---------------------CGG--U-ACCCCAAUUUCUUCACGCUCUUUUUAGGAUCAUCCUAGUCUGCGCGGCACUCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG ---------------------.((--.-...))..........(((.(...(((((.....)))))...).)))(((((..((.((((.....))))))..)))))...... ( -28.30) >consensus _________________A________AUAU___AAUC_CGUUUCUAUCCUUUCAGGAUCAUCCCAGCUUGAGAGGAACUCCGCUGGCCAUGCUGGCCGCCCAGUGCAACAAG ..............................................((((((((((..........))))))))))(((..((.((((.....))))))..)))........ (-18.52 = -18.72 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006