Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,594,336 – 9,594,428 |
Length | 92 |
Max. P | 0.936633 |
Location | 9,594,336 – 9,594,428 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.79 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -5.70 |
Energy contribution | -5.66 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -2.09 |
Structure conservation index | 0.24 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9594336 92 - 22224390 CAACAUGGUUCAAUAU----GGAUCCUUACAAUGGCAAAUGG------------------GACUG----CAAAAAGUGGCAGUUAAAACUUAAGAGUCCAUCAAA-AUAUGACUAUUAA ...((((.......((----(((..((((((........)).------------------(((((----(........))))))......))))..)))))....-.))))........ ( -17.30) >DroSec_CAF1 53040 92 - 1 CAACAUGGUUCAAUAU----GGAUCCUUACAAUGGCAAAUGG------------------GACUG----CCAAAAUGGGCAGUUAAAACUUUAGAGUCCAUCAAA-AUAUGCCUAUUAA ......(((((.....----)))))........((((.....------------------(((((----((......))))))).........((.....))...-...))))...... ( -19.50) >DroSim_CAF1 39540 92 - 1 CAACAUGGUUCAAUAU----GGAUCCUUACAAUGGCAAAUGG------------------GAAUG----CCAAAAUGGGCAGUUAAAACUUUAGAGUCCAUCAAA-AUAUGCCUAUUAA ......(((((.....----))))).......(((((.....------------------...))----))).((((((((((....))....((.....))...-...)))))))).. ( -17.40) >DroEre_CAF1 57845 115 - 1 CAACAUGGCACCAUAUAUGUAGAUCCUUCAAAUGGUAAAUGACAUUUGAAUGAUCUGUGGGCCUG----CAAAAAGUGGCAGUUAAAACUUAAGGGUCCAUCAAAAAAAUUCCUAUUAA ..(((((........)))))(((((.((((((((........)))))))).)))))((((((((.----....((((..........))))..)))))))).................. ( -28.80) >DroYak_CAF1 55897 114 - 1 CAACAUGGCUCAAUAU----AGAUCCUUCAAAUGGUAAAUGGCAUUUGAAUGAUCUGUGCGGCUGGCGGGAAAAGCUGGCAGUUAAAACGUAAGAGUCCAUCAAA-AAAUGCACAUUAA ....(((((((..(((----(((((.((((((((.(....).)))))))).)))))))).(((((.(((......))).))))).........))).))))....-............. ( -34.00) >consensus CAACAUGGUUCAAUAU____GGAUCCUUACAAUGGCAAAUGG__________________GACUG____CAAAAAGUGGCAGUUAAAACUUAAGAGUCCAUCAAA_AUAUGCCUAUUAA ....(((((((.............((.......)).........................(((((....((.....)).))))).........))).)))).................. ( -5.70 = -5.66 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:43 2006