Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,593,284 – 9,593,376 |
Length | 92 |
Max. P | 0.844662 |
Location | 9,593,284 – 9,593,376 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -39.28 |
Consensus MFE | -24.24 |
Energy contribution | -26.08 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.95 |
Structure conservation index | 0.62 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9593284 92 - 22224390 ACUGGUCUUAUGA--------UGGUCGGGAUGGU---------CCUUCGGUCCACUG----GUCCUCUCACUUGAGGAUCUGGACUACGGCUGGACGUGA------ACGUGGACCUGCA .(((..(......--------.)..)))...(((---------((..(((((((..(----((((((......))))))))))))((((......)))).------.)).))))).... ( -36.90) >DroSec_CAF1 52013 102 - 1 ACUGGUCUUAUGA--------UGGUCGGUAUGCU---------CCUCCGGUCCACUGUUCGGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACGUGGACGUGGACGUGGACCUGCA ((((..(......--------.)..)))).(((.---------..((((((((((..((((((((((......))))).)))))(((((......)))))..)))))).))))...))) ( -40.60) >DroSim_CAF1 38519 96 - 1 ACUGGUCUUAUGA--------UGGUCGGUAUGGU---------CCUCCGGUCCACUGUUCGGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACGUGG------ACGUGGACCUGCA ((((..(......--------.)..))))..(((---------((....((((((.(((((((((((......))))))).((......)).))))))))------))..))))).... ( -40.70) >DroEre_CAF1 56805 94 - 1 ACUGGUCUUAUGA--------UGGUCGGGAUGGUCGGUAUGGUC---GGGU----U----GGUCCUCUCACUUGAGGAUCUGGACUACGCCCGGACCUGG------ACCUGAACCUGGA ....(((....))--------)(((((((..((((((..(((((---.((.----.----.((((((......)))))))).)))))..))..))))...------.)))).))).... ( -35.60) >DroYak_CAF1 54871 109 - 1 ACUGGUCUUAUGAUGUUCUGAUGGUCGGGAUGGUCGAGAUGGUCCUCUGGUCCUCU----GGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACCUGG------ACCUGGACUUGGA .(.(((((......((((((.....))))))((((.(...(((((.(((((((...----(((((((......))))))).)))))).)...)))))).)------))).))))).).. ( -42.60) >consensus ACUGGUCUUAUGA________UGGUCGGGAUGGU_________CCUCCGGUCCACUG___GGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACGUGG______ACGUGGACCUGCA .(((..(...............)..)))....................(((((((.....(((((((......)))))))....(((((......)))))........))))))).... (-24.24 = -26.08 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:42 2006