Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,591,340 – 9,591,441 |
Length | 101 |
Max. P | 0.944683 |
Location | 9,591,340 – 9,591,441 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -21.44 |
Consensus MFE | -11.31 |
Energy contribution | -11.37 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.62 |
Structure conservation index | 0.53 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9591340 101 + 22224390 --CACAUAAUUCAAUUAAUUUG-----AUUUAAUUGCCGCAAUGAAAGCGGCGCAUAAAUUGCAUAAAUUACCCACGAACUGAGCAA---------UGCACCGGCAAUUAAACGACC --........((((.....)))-----)((((((((((((.......))((.((((....(((....................))))---------))).))))))))))))..... ( -22.15) >DroPse_CAF1 66268 100 + 1 CACACAUAAUUCAAUUAAUUUGAUUUGAUUUAAUUGCCGCAAUGAAAGCGGCUCAUAAAUUGCAUAAAUUACCCACGAACUAGUG-----------------AGUAAUUAUACGAGU ........((((..............((((((...(((((.......)))))...)))))).....((((((.(((......)))-----------------.))))))....)))) ( -21.30) >DroSim_CAF1 36567 101 + 1 --CACAUAAUUCAAUUAAUUUG-----AUUUAAUUGCCGCAAUGAAAGCGGCGCAUAAAUUGCAUAAAUUACCCACGAAAUGAGCAA---------UGCACCGGCAAUUAAACGACC --........((((.....)))-----)((((((((((((.......))((.((((....(((....(((........)))..))))---------))).))))))))))))..... ( -22.20) >DroYak_CAF1 52764 110 + 1 --CACAUAAUUCAAUUAAUUUG-----AUUUAAUUGCCGCAAUGAAAGCAGCGCAUAAAUUGCAUAAAUUACCCACGAACUGAGCAACUGAGCAAUUGCAGCGGCAAUUAAACGACC --........((((.....)))-----)((((((((((((............(((.....)))....................((((........)))).))))))))))))..... ( -25.20) >DroAna_CAF1 64348 81 + 1 --CACAUAAUUCAAUUAAUUUG-----AUUUAAUUGCUGCAAUGAAAGCGGCGCAUAAAUUGCAUAAAUUA----------------------------AAAGGCAAUUAAACG-CA --................((((-----(((((...(((((.......)))))(((.....))).)))))))----------------------------))..((........)-). ( -16.50) >DroPer_CAF1 67115 100 + 1 CACACAUAAUUCAAUUAAUUUGAUUUGAUUUAAUUGCCGCAAUGAAAGCGGCUCAUAAAUUGCAUAAAUUACCCACGAACUAGUG-----------------AGUAAUUAUACGAGU ........((((..............((((((...(((((.......)))))...)))))).....((((((.(((......)))-----------------.))))))....)))) ( -21.30) >consensus __CACAUAAUUCAAUUAAUUUG_____AUUUAAUUGCCGCAAUGAAAGCGGCGCAUAAAUUGCAUAAAUUACCCACGAACUGAGC______________A_CGGCAAUUAAACGACC ...............(((((((.....(((((...(((((.......)))))...)))))....))))))).............................................. (-11.31 = -11.37 + 0.06)
Location | 9,591,340 – 9,591,441 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -25.94 |
Consensus MFE | -12.77 |
Energy contribution | -12.77 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.55 |
Structure conservation index | 0.49 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9591340 101 - 22224390 GGUCGUUUAAUUGCCGGUGCA---------UUGCUCAGUUCGUGGGUAAUUUAUGCAAUUUAUGCGCCGCUUUCAUUGCGGCAAUUAAAU-----CAAAUUAAUUGAAUUAUGUG-- ....(((((((((((((((((---------(((((((.....)))))).............)))))))((.......)))))))))))))-----....................-- ( -28.41) >DroPse_CAF1 66268 100 - 1 ACUCGUAUAAUUACU-----------------CACUAGUUCGUGGGUAAUUUAUGCAAUUUAUGAGCCGCUUUCAUUGCGGCAAUUAAAUCAAAUCAAAUUAAUUGAAUUAUGUGUG ....(((((((((((-----------------(((......)))))))).))))))....((((((((((.......)))))............((((.....)))).))))).... ( -26.30) >DroSim_CAF1 36567 101 - 1 GGUCGUUUAAUUGCCGGUGCA---------UUGCUCAUUUCGUGGGUAAUUUAUGCAAUUUAUGCGCCGCUUUCAUUGCGGCAAUUAAAU-----CAAAUUAAUUGAAUUAUGUG-- ....(((((((((((((((((---------((((((((...))))))).............)))))))((.......)))))))))))))-----....................-- ( -29.01) >DroYak_CAF1 52764 110 - 1 GGUCGUUUAAUUGCCGCUGCAAUUGCUCAGUUGCUCAGUUCGUGGGUAAUUUAUGCAAUUUAUGCGCUGCUUUCAUUGCGGCAAUUAAAU-----CAAAUUAAUUGAAUUAUGUG-- ....(((((((((((((.((((((((..(((((((((.....)))))))))...)))))...))))).((.......)))))))))))))-----....................-- ( -31.40) >DroAna_CAF1 64348 81 - 1 UG-CGUUUAAUUGCCUUU----------------------------UAAUUUAUGCAAUUUAUGCGCCGCUUUCAUUGCAGCAAUUAAAU-----CAAAUUAAUUGAAUUAUGUG-- .(-(((..((((((....----------------------------........))))))...)))).((.......))..(((((((..-----....))))))).........-- ( -14.20) >DroPer_CAF1 67115 100 - 1 ACUCGUAUAAUUACU-----------------CACUAGUUCGUGGGUAAUUUAUGCAAUUUAUGAGCCGCUUUCAUUGCGGCAAUUAAAUCAAAUCAAAUUAAUUGAAUUAUGUGUG ....(((((((((((-----------------(((......)))))))).))))))....((((((((((.......)))))............((((.....)))).))))).... ( -26.30) >consensus GGUCGUUUAAUUGCCG_U______________GCUCAGUUCGUGGGUAAUUUAUGCAAUUUAUGCGCCGCUUUCAUUGCGGCAAUUAAAU_____CAAAUUAAUUGAAUUAUGUG__ ....((..(((((((.............................)))))))...)).(((((...(((((.......)))))...)))))........................... (-12.77 = -12.77 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:41 2006