Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,591,024 – 9,591,117 |
Length | 93 |
Max. P | 0.759431 |
Location | 9,591,024 – 9,591,117 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.84 |
Mean single sequence MFE | -19.64 |
Consensus MFE | -16.50 |
Energy contribution | -16.42 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.70 |
Structure conservation index | 0.84 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9591024 93 + 22224390 GCUAGGACCGAUCGAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGUUUUUUUUUUUU------UGUGUGGUGCUUAAAUGUGCUGCU .(((((.(((((......))))))))))..(((((........((((.......)))).........))------)))(..(..(......)..)..). ( -22.03) >DroSec_CAF1 49744 86 + 1 GCUAGGCCCGAUUGAUUAAUCGGCUUAGAAACUAAUUUUGUUUGCAUUUUUAAUGUGUUUUG-------------UCUGUGGUGCUUAAAUGUGCUGCU .(((((((.((((....)))))))))))((((.......))))((((.(((((.(..((...-------------.....))..)))))).)))).... ( -20.30) >DroSim_CAF1 36277 86 + 1 ACUACGCCCGAUUGAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGUUUUG-------------UCUGUGGUGCUUAAAUGUGCUGCU .(((.(((.((((....))))))).)))(((((.....)))))((((.(((((.(..((...-------------.....))..)))))).)))).... ( -17.50) >DroEre_CAF1 54512 92 + 1 GCUAGGCCUCGUUUAUUAAUCGGCUUAGAAACAAAUUGUGUUUGCAUUUUUAAUGUGUUUCUUUUUUUU-------CCGUUGUGCUUAAAUAUGCUGCU .(((((((..(((....))).)))))))(((((.....)))))((((.(((((.(..(..(........-------..)..)..)))))).)))).... ( -17.00) >DroYak_CAF1 52450 99 + 1 GCUAGGCCUGGUUUAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGCUUUUUUUUUUUGUUUUGCCUGUUGUGCUUAAAUAUGCUGCU .(((((((.((((....)))))))))))(((((((........((((.......))))........))))))).((.((((.......)))).)).... ( -21.39) >consensus GCUAGGCCCGAUUGAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGUUUUUUUUUUUU______UCUGUGGUGCUUAAAUGUGCUGCU .(((((.((((((....)))))))))))(((((.....)))))((((.(((((.(..(.......................)..)))))).)))).... (-16.50 = -16.42 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:39 2006