Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,095,457 – 1,095,577 |
Length | 120 |
Max. P | 0.572454 |
Location | 1,095,457 – 1,095,577 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.89 |
Mean single sequence MFE | -46.93 |
Consensus MFE | -24.45 |
Energy contribution | -25.07 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.43 |
Mean z-score | -1.75 |
Structure conservation index | 0.52 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1095457 120 - 22224390 AAGGGGUCAAUCGUCAUAGUAGAUGAGGCUCACAACCUACUGGACAGCGUGGCCCAGCUGCACGGCUCCGAAAUCAGCCGUCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCGGCUAU ..((((((..(((((......)))))(((((....((....))........((((((((((((((((........))))))..)))))))).)))))))........)))).))...... ( -47.80) >DroSec_CAF1 1561 120 - 1 AAGGCGUCCAUCGUCAUAGUAGAUGAGGCUCACAACCUACUGGACAGCGUGGCCCAGCUGCACGGCUCCGAAAUCAACCGGCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCGCCUAU .(((((.((.(((((......)))))))...........(((.((....((((((.(((.((..((((((........))).)))...)).)))))))))..)).))).....))))).. ( -47.70) >DroEre_CAF1 1545 120 - 1 AAGGGCUCCAUCGUAAUAGUCGAUGAGGCUCACAACCUAUUGGACAGCGUGGCCCAGCUGCACGGCUCUGAAAUCAACCGCCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCUGCUAU ..((((..(((((.......)))))..))))...((((..(((.(..(((...((((((((..(((..((....))...))).)))))))).))).))))))))((((.....))))... ( -46.10) >DroYak_CAF1 1557 120 - 1 AAGGGCUCCAUUGUAAUAGUCGACGAGGCUCACAACCUGUUGGACAGUGUGGCCCAGCUGCACGGCUCUGAAAUCAACCGCCAGCAGCUGGAGCGGGCCAAGGUGCAGAUCUCCGGCUAU ..((((..((((((.....(((((.(((.......))))))))))))))..)))).((((..(((...((....)).))).))))((((((((.(.((....)).)....)))))))).. ( -45.20) >DroAna_CAF1 1579 120 - 1 AAAGGUUCCAUCGUUAUUGUCGAUGAGGCCCACAAUCUGCUGGACUCGGUGGCCCAGAUUCAUGGGGCGGAGAUAACCCGUUCGGACAUGGAGUUCGCCCAGCUGGAGAUGAUCAACUAC ...(((..(((((.......)))))..)))..((.((((((((((((.(((.((((......))))((((.......)))).....))).))))....))))).)))..))......... ( -39.60) >DroMoj_CAF1 3857 120 - 1 CGCGGCGCCAUCAUCAUUGUGGACGAGGCGCACAAUCUGCUGGACACCAUUGCCCAGCUGCACAGCAGCGAGCUGAGCCUGGCCCAGCUGCAGCUGGCCAAGCAACAGCUGGCUGGGUAC .((((((((.((.((......)).))))))).......(((((.((....)).))))))))((..((((.(((((.((.(((((.(((....)))))))).))..))))).)))).)).. ( -55.20) >consensus AAGGGCUCCAUCGUCAUAGUCGAUGAGGCUCACAACCUACUGGACAGCGUGGCCCAGCUGCACGGCUCCGAAAUCAACCGCCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCGGCUAU ...(((((..(((((......)))))(((((....((....))........((((((((((.(((............)))...)))))))).)))))))........))..)))...... (-24.45 = -25.07 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:29 2006