| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,586,954 – 9,587,050 |
| Length | 96 |
| Max. P | 0.912848 |
| Location | 9,586,954 – 9,587,050 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.03 |
| Mean single sequence MFE | -21.05 |
| Consensus MFE | -13.95 |
| Energy contribution | -14.28 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.912848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9586954 96 - 22224390 AAAUACUGUAGACGGGAGAC--AGAAG---A-CAGAAGACCGGUAGCCAAUUGCUUUGGCAGUUAAGGUUGCACCAAUUCGUUUAAUAAUAAAUAAUGAAAA--------------- .....((((.....(....)--.....---)-))).......((((((((((((....))))))..)))))).....((((((...........))))))..--------------- ( -21.50) >DroPse_CAF1 61334 115 - 1 CGA-AUGGCGAAUGGCAGCCGGAGAAGAGUG-GAGAAGACCGGUAGCCAAUUGCUUUGGCAGCUAAGGUUGCACCAAUUCGUUUAAUAAUAAAUAAUGAAAAAGGCCCCAACUCCCG (((-(((((((.((((.(((((.........-.......))))).)))).)))))...(((((....)))))....))))).................................... ( -29.39) >DroEre_CAF1 50573 91 - 1 AAAAACUGAAA-----AAAC--AGAAG---A-CAGAAGACCGGUAGCCAAUUGCUUUGGCAGUUAAGGUUGCACCAAUUCGUUUAAUAAUAAAUAAUGAAAA--------------- .....(((...-----...)--)).((---(-(.(((.....((((((((((((....))))))..)))))).....)))))))..................--------------- ( -18.20) >DroWil_CAF1 83089 89 - 1 GGA-AUA-CGAAUGC--------GAAU---ACGAGAACACCAGUAGCCAAUUGCCUUGGCAGUUAAGGUUGCACCAAUUCGUUUAAUAAUAAAUAAUGAAAU--------------- ...-..(-(((((.(--------(...---.)).........((((((((((((....))))))..))))))....))))))....................--------------- ( -18.10) >DroYak_CAF1 48183 96 - 1 AAAAACUGGAGACGAGAGAU--GGGAG---A-CAGAAGACCGGUAGCCAAUUGCUUUGGCAGUUAAGGUUGCACCAAUUCGUUUAAUAAUAAAUAAUGAAAA--------------- .........(((((((....--.(...---.-).........((((((((((((....))))))..)))))).....)))))))..................--------------- ( -20.50) >DroAna_CAF1 56730 94 - 1 AAAAAGAGAAGA--AAAGAU--GGCUG---G-AAGAAGACCGGUAGCCAAUUGCUUUGGCAGUUAAGGUUGCACCAAUCCGUUUAAUAAUAAAUAAUGAAAA--------------- ............--..((((--((.((---(-..(.....).((((((((((((....))))))..)))))).)))..))))))..................--------------- ( -18.60) >consensus AAAAACUGAAAA_GA_AGAC__AGAAG___A_CAGAAGACCGGUAGCCAAUUGCUUUGGCAGUUAAGGUUGCACCAAUUCGUUUAAUAAUAAAUAAUGAAAA_______________ ..................................(((.....((((((((((((....))))))..)))))).....)))..................................... (-13.95 = -14.28 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:38 2006