Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,575,905 – 9,575,996 |
Length | 91 |
Max. P | 0.920364 |
Location | 9,575,905 – 9,575,996 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -17.60 |
Energy contribution | -18.52 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -2.22 |
Structure conservation index | 0.63 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9575905 91 - 22224390 UCUGACCAAAUCGUAUCUGUAGUGACCUAUCUUGCAGAUACAUAUCUCGAGGUGCGGUUU-------UGGUAUCUUCGGAUUUGGGA--------------UUUGAGAUUUC .....(((((((((((((((((.((....))))))))))))......((((((((.....-------..))))).))))))))))..--------------........... ( -28.70) >DroSec_CAF1 34948 98 - 1 UCUGACCAAAUCGCAUCUGGAGUGACCUAUCUUGCAGAUACAUAUCUCGAAGUGCGGUUU-------UGAGAUCUUCGGAUUUUGGA-------UUUGAGAUUUGAGAUUUC .......((((((((..(.(((.....((((.....)))).....))).)..))))))))-------.(((((((.((((((((...-------...))))))))))))))) ( -27.50) >DroSim_CAF1 21397 98 - 1 UCUGACCAAAUCGCAUCUGGAGUGACCUAUCUUGCAGAUACAUAUCUCGAAGUGCGGUUU-------UGGGAUCUUCGGAUUUUGGA-------UUUGAGAUUUGAGAUUAC .....((((((((((..(.(((.....((((.....)))).....))).)..))))).))-------)))(((((.((((((((...-------...))))))))))))).. ( -28.60) >DroEre_CAF1 39741 106 - 1 UCUUUCCAAAUCGCAUCUGAAGUGACCUAUCUUCCAGAUACAUAUCUCGAAGUGCGGUUU------UUGGGAUCAACGGAUUUCGGAUGUCUGAUUACAGAUUUCAGAUUUC ..............(((((((..((((...((((.((((....)))).))))...))))(------(((..(((....)))..)))).(((((....))))))))))))... ( -26.10) >DroYak_CAF1 36757 98 - 1 UUAGCCCAAAUCGCAUCUGGAGUGACCUAUCUUCUAGAUACAUAUCUCGAUGUGCGGUUUAGGGAUUUAAGAUCUACGGAUUUC--------------UGAUUUUAGAUUUC ....((((((((((((.(.(((.....((((.....)))).....))).).))))))))).)))((((((((((..........--------------.))))))))))... ( -28.40) >consensus UCUGACCAAAUCGCAUCUGGAGUGACCUAUCUUGCAGAUACAUAUCUCGAAGUGCGGUUU_______UGGGAUCUUCGGAUUUCGGA_______UU__AGAUUUGAGAUUUC .....(((((((((((.(.(((.....((((.....)))).....))).).)))))))))........((((((....)))))))).......................... (-17.60 = -18.52 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:33 2006