Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,553,473 – 9,553,573 |
Length | 100 |
Max. P | 0.798090 |
Location | 9,553,473 – 9,553,573 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.69 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -26.53 |
Energy contribution | -26.56 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -2.00 |
Structure conservation index | 0.78 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9553473 100 + 22224390 GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC-AGCGCCCUCCCCCAGUACCGCCUCCUCCGCCCACCACA----- ((-.(((((((((((.(..(((((....)))))..))))))).....((((........((((-..............))))))))......)))).).)).----- ( -31.74) >DroPse_CAF1 26087 95 + 1 GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGCCUGUACGCCCUCCUA---------CUCCUCC-CCCAACG-AGCCAC ((-((((((((((((.(..(((((....)))))..)))))))).((.(((((.....))))).))...........---------......)-)))))).-...... ( -38.10) >DroEre_CAF1 13120 99 + 1 GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC-AGCGCCCUCCCCCAGCACCGCCCCCUCCGCCCACCG-A----- ((-((((((((((((.(..(((((....)))))..))))))))....((((............-..))))...)))))))....................-.----- ( -35.54) >DroWil_CAF1 21916 91 + 1 GUUUGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUUC-AAUGCCCGACC----------CUCCUCCAGCCACCGCA----- (.(((((((((((((.(..(((((....)))))..))))))))....((((..((((......-))))..)).))----------...)))))).)......----- ( -28.50) >DroYak_CAF1 13711 99 + 1 GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC-AGCGACCUCCCCCAGCACCGCCCCCUCCGCCCACCG-A----- ((-((((((((((((.(..(((((....)))))..)))))))).....((((.....))))..-.........)))))))....................-.----- ( -32.20) >DroPer_CAF1 26735 95 + 1 GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGCCUGUACGCCCUCCUA---------CUCCUCC-CCCAACG-AGCCAC ((-((((((((((((.(..(((((....)))))..)))))))).((.(((((.....))))).))...........---------......)-)))))).-...... ( -38.10) >consensus GU_UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC_AACGCCCUCCCC_________CUCCUCCGCCCACCG_A_____ ....((..(((((((.(..(((((....)))))..))))))))..))((((...............))))..................................... (-26.53 = -26.56 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:29 2006