Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,543,372 – 9,543,462 |
Length | 90 |
Max. P | 0.999784 |
Location | 9,543,372 – 9,543,462 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 69.12 |
Mean single sequence MFE | -14.02 |
Consensus MFE | -9.50 |
Energy contribution | -10.28 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.68 |
SVM decision value | 4.07 |
SVM RNA-class probability | 0.999784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9543372 90 + 22224390 AUUUCCCGCAGCUCAGCAUCUAUACCCCACACCCACC---CCCCUUACUUCAACUGGGGAUCAUAACUCACAAGGGGCACAUAUUCAAUCUUU ...((((((......))....................---((((...........))))..............))))................ ( -13.80) >DroSec_CAF1 3062 72 + 1 --------------AGCAUCCCAACCCC----CAGCC---CCCCUUAGUUCAACUGGGGAUCAUAACUCAGAAGGGGCACAUAUUCAAUCUUU --------------..............----..(((---((((((((.....)))))).((........)).)))))............... ( -17.20) >DroYak_CAF1 3332 84 + 1 AUUUCCCGCAACUU-----CCCCUCCCC----CCUCUCCACCCUGCAGUUCAACUGGGAAUCAUAACUCAGAAGGGGCACAUAUUCAAUCUAU ...(((((((....-----.........----...........))).......(((((........)))))..))))................ ( -11.06) >consensus AUUUCCCGCA_CU_AGCAUCCCAACCCC____CCACC___CCCCUUAGUUCAACUGGGGAUCAUAACUCAGAAGGGGCACAUAUUCAAUCUUU ........................................((((((.......(((((........)))))))))))................ ( -9.50 = -10.28 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:27 2006