Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,092,242 – 1,092,337 |
Length | 95 |
Max. P | 0.833721 |
Location | 1,092,242 – 1,092,337 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.60 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -14.50 |
Energy contribution | -17.42 |
Covariance contribution | 2.92 |
Combinations/Pair | 1.21 |
Mean z-score | -2.00 |
Structure conservation index | 0.62 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1092242 95 + 22224390 UUACGAACAAGGUGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGACAACUAACGGCUAUCAUG ...........((((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......)))))))). ( -31.80) >DroSec_CAF1 13809 95 + 1 UUACAAACAAUGCGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGGAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUG .............((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......))))))... ( -28.60) >DroSim_CAF1 13882 95 + 1 UUACAAACAAGGCGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUG .............((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......))))))... ( -29.10) >DroEre_CAF1 16431 86 + 1 UCACAGACAAGAUGAUGGCGAUUUCUGGAUACCCUGCACAAA--------U-ACUUUAAAAUAACCAUAUGAAAGGGCAACCAACGGCUAUUAUG ...........((((((((.......((....))........--------.-......................((....))....)))))))). ( -13.60) >DroYak_CAF1 13001 86 + 1 UCACGGACAAGUUGAUGAUGGCCUCUAGAUACCCUGCACAAA--------U-AAUUUAGAAGAAACAUAUGUAAGGGCAACCAGCGGAUAUCAUG ..............((((((.(((((((((............--------.-.)))))))..............((....))...)).)))))). ( -14.74) >consensus UUACAAACAAGGUGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUG .............((((((..(((((((((((.(((((.....)))))...)))))))))))............((....))....))))))... (-14.50 = -17.42 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:28 2006