Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,536,609 – 9,536,699 |
Length | 90 |
Max. P | 0.969776 |
Location | 9,536,609 – 9,536,699 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 73.77 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -10.41 |
Energy contribution | -12.00 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.19 |
Mean z-score | -2.52 |
Structure conservation index | 0.39 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9536609 90 - 22224390 AUUCUCA---ACCGAUCCGUGGCGAUAAUCAAUUGAUUAGCCGCGACGAG--CCCACCAAACAAGGCGUGGGAUCAGCGAAUCUGCAGAU--CAGCG .......---...((((((((((..(((((....)))))))))))..((.--((((((.......).))))).)).(((....))).)))--).... ( -27.70) >DroGri_CAF1 23274 73 - 1 AUCCCCA---AAU-----GCUUUGUUAAUCAAUUGAUUAGCAGCAACAUG--CCCACCAAACACCAAA-GUUA--AAU------CCAGCAAC----- .......---..(-----(((.((((((((....))))))))((.....)--)...............-....--...------..))))..----- ( -11.70) >DroSec_CAF1 19924 92 - 1 AUUCUCA---ACCGAACCGUGGCGAUAAUCAAUUGAUUAGCCGCGACGAUUAGCCACCAAACAAGGCGUGGGAUCAGCGGAUCUGCAGAU--CAGCG ..(((((---.......(((.(((.(((((....)))))..))).)))....(((.........))).)))))...((.((((....)))--).)). ( -28.20) >DroSim_CAF1 19610 90 - 1 AUUCCCA---ACCGAUCCGUGGCGAUAAUCAAUUGAUUAGCCGCGACGAG--CCCACCAAACAAGGCGUGGGAUCAGCGGAUCUGCAGAU--CAGCG ..(((((---.......(((.(((.(((((....)))))..))).))).(--((..........))).)))))...((.((((....)))--).)). ( -30.60) >DroEre_CAF1 20721 73 - 1 --------------------UGCGAUAAUCAAUUGAUUAGCCGCGACGAG--CCCACCAAACAAGGCGUGGGAUCAGCUGAUCUGCAGAU--CAGCG --------------------.(((.(((((....)))))..)))...((.--((((((.......).))))).)).(((((((....)))--)))). ( -28.70) >DroYak_CAF1 24728 93 - 1 AUUCCCAAAAACCGAUCCGUUGCGAUAAUCAAUUGAUUAGCCGCGACGAG--CCCACCAAACAAGGCGUGGGAUCAGCAGAUCACCAGAU--CAGCG ..(((((..........(((((((.(((((....)))))..))))))).(--((..........))).)))))...((.((((....)))--).)). ( -31.40) >consensus AUUCCCA___ACCGAUCCGUGGCGAUAAUCAAUUGAUUAGCCGCGACGAG__CCCACCAAACAAGGCGUGGGAUCAGCGGAUCUGCAGAU__CAGCG .................((((((..(((((....))))))))))).......(((((..........)))))......................... (-10.41 = -12.00 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:24 2006