Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,531,167 – 9,531,273 |
Length | 106 |
Max. P | 0.939077 |
Location | 9,531,167 – 9,531,273 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.95 |
Mean single sequence MFE | -32.45 |
Consensus MFE | -23.98 |
Energy contribution | -25.10 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.47 |
Structure conservation index | 0.74 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9531167 106 + 22224390 AGCGAGUCCAGAGAUGACCACAUGAUGACGGUGACACAUUCGCCGAUACUUUUA-------------UGCGGUCACUUGAAAAUGUGCACAAAGAAGUUUUGUAAGAAACAUCAUUGGU .(((......(((.(((((.(((((...((((((.....))))))......)))-------------)).)))))))).......))).(((.((.(((((....))))).)).))).. ( -30.12) >DroSec_CAF1 15004 106 + 1 AGCGAGUCCAGAGAUGACCACAUGAUGACGGUGACACAUUCGCCGAUACUUUUA-------------UGCGGUCACUUGAAAAUGCGCACAAAGAAGUUUUGUAAGAAACAUCUUUGGU .(((......(((.(((((.(((((...((((((.....))))))......)))-------------)).)))))))).......))).((((((.(((((....))))).)))))).. ( -35.92) >DroSim_CAF1 14509 106 + 1 AGCGAGUCCAGAGAUGACCACAUGAUGACGGUGACACAUUCGCCGAUACUUUUA-------------UGCGGUCACUUGAAAAUGCGCACAAAGAAGUUUUGUAAGAAACAUCUUUGGU .(((......(((.(((((.(((((...((((((.....))))))......)))-------------)).)))))))).......))).((((((.(((((....))))).)))))).. ( -35.92) >DroEre_CAF1 15326 117 + 1 AGCGAGUCCAGAGAUGACCACAUGAUGAUGGUGACAUAUUCGCCGAUACUUUUUCACUGAAUUUCUCAGCGCGCACUUAAAA-GGCGCACAAAGAAGUUUUCUAAAAAA-UGCUUUGGU .......((((((...............((((((.....))))))....(((((....((((((((..(.((((.((....)-))))).)..))))))))....)))))-..)))))). ( -27.70) >DroYak_CAF1 15595 105 + 1 AGCGAGUUCAGAGAUGACCACAUGAUGACGGUGACACAUUCGCCGAUACUUUUA-------------UGCGGUCACUUGAAAUUGCGCACAAAGAGAUUUUGUAUGAAC-UGCUUUGGU .(((((((..(((.(((((.(((((...((((((.....))))))......)))-------------)).))))))))..)))).))).(((((((.(((.....))))-).))))).. ( -32.60) >consensus AGCGAGUCCAGAGAUGACCACAUGAUGACGGUGACACAUUCGCCGAUACUUUUA_____________UGCGGUCACUUGAAAAUGCGCACAAAGAAGUUUUGUAAGAAACAUCUUUGGU .(((......(((.(((((.(.....).((((((.....)))))).........................)))))))).......))).((((((.(((((....))))).)))))).. (-23.98 = -25.10 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:23 2006