Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,530,526 – 9,530,628 |
Length | 102 |
Max. P | 0.542989 |
Location | 9,530,526 – 9,530,628 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -15.78 |
Consensus MFE | -14.08 |
Energy contribution | -13.96 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.17 |
Structure conservation index | 0.89 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9530526 102 + 22224390 UUUUUCAUUUUUCCCGGCCCACACAAAAAUCGCAAAAAUAUUUGGCGAAAAUACGAAAUUCAAGAAAAUGCCGUAGAAAAUUUGAAAAAAAUUUCAGCCCGA (((((((.(((((.((((...........((((...........))))......(.....)........))))..)))))..)))))))............. ( -15.70) >DroSec_CAF1 14362 102 + 1 UUUUUCAUUUUUCCCGGCCCACACAAAAAUCGCAAAAAUAAUUGGCGAAAAUACGAAAUUCAAGAAAAUGCCGUAGAAAAUUUGAAAAAAAUUUCAGCCCGA (((((((.(((((.((((...........((((...........))))......(.....)........))))..)))))..)))))))............. ( -15.70) >DroSim_CAF1 13868 102 + 1 UUUUUCAUUUUUCCCGGCCCACACAAAAAUCGCAAAAAUAAUUGGCGAAAAUACGAAAUUCAAGAAAAUGCCGUAGAAAAUUUGAAAAAAAUUUCAGCCCGA (((((((.(((((.((((...........((((...........))))......(.....)........))))..)))))..)))))))............. ( -15.70) >DroEre_CAF1 14685 102 + 1 UUUUUUAUUUUUCCCGGCCCGCACAAAAAUCGUAAAAAUAAUUGGCAAAAAUACGAAAUUCAAGAAAAUGCCGUAGAAAAUUUGAAAAAAUUUCCGGCCAGA ...............((((........................((((.....................))))...(.((((((....)))))).)))))... ( -14.80) >DroYak_CAF1 14954 102 + 1 UUUUUCAUUUUUCCCGGCCCGCACAAAAAUCGCAAAAAUAAUUGGCGAAAAUACGAAAUUCAAGAAAAUGCCGUAGAAAAUUUGAAAAAAUUUCCGGCCAGA ...............((((..........((((...........))))...((((..(((......)))..))))(.((((((....)))))).)))))... ( -17.00) >consensus UUUUUCAUUUUUCCCGGCCCACACAAAAAUCGCAAAAAUAAUUGGCGAAAAUACGAAAUUCAAGAAAAUGCCGUAGAAAAUUUGAAAAAAAUUUCAGCCCGA (((((((.(((((.((((...........((((...........))))......(.....)........))))..)))))..)))))))............. (-14.08 = -13.96 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:20 2006