Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,527,471 – 9,527,564 |
Length | 93 |
Max. P | 0.590695 |
Location | 9,527,471 – 9,527,564 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.51 |
Mean single sequence MFE | -35.01 |
Consensus MFE | -25.63 |
Energy contribution | -25.19 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.33 |
Mean z-score | -1.21 |
Structure conservation index | 0.73 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9527471 93 - 22224390 CCAGCGGAUAUCUCUUACU------UUCUGGAGGAGAACCUGCCCGAUGAGCUGGUGUCCUCGAAUAGUGGCUGGUCGGAUCAGCUGACCGGCGG---AGCA ...(((((((((.((((..------.((.(((((....))).)).))))))..)))))))..........(((((((((.....)))))))))..---.)). ( -34.30) >DroPse_CAF1 10575 93 - 1 UUAGCGGAUAUCUCGUUGU------UUCUGGAAGAGAAUCUGCCCGACGAGCUGGUGUCCUCAAACAGCGGCUGGUCGGAUCAGCUGAGUGGCGG---CGGC ...((((((.((((.....------........))))))))))(((((.(((((.(((......))).))))).)))))....((((.....)))---)... ( -37.12) >DroGri_CAF1 11569 96 - 1 UUAGCGGAUCUA---UUCUAUUCUAUUCUGGAAGACAAUCUACCCGAUGAGCUGGUGUCUUCGAACAGCGGCUGGUCGGAUCAGCUAAACACUGG---CGGC (((((((((...---(((((........)))))....))))..(((((.(((((.(((......))).))))).)))))....))))).......---.... ( -29.90) >DroEre_CAF1 11345 93 - 1 UUAGCGGACAUCUCCUACU------UUCUGGAGGAGAACCUGCCCGAUGAGUUGGUGUCCUCGAGCAGCGGCUGGUCGGAUCAGCUGACCGGCGG---AGCA ...(((((((((....(((------(((.(((((....))).)).)).)))).)))))))........(.(((((((((.....))))))))).)---.)). ( -38.30) >DroMoj_CAF1 12152 93 - 1 GUAGCGGAUCUG---UACU------UUCUGGAGGACAAUCUGCCCGAUGAGCUGGUGUCCUCCAGCAGUGGCUGGUCGGAUCAGCUGAACACUGGUGGCGGC .((((.((((((---.((.------..((((((((((.((.((.......)).))))))))))))(((...))))))))))).))))....(((....))). ( -33.30) >DroPer_CAF1 9267 93 - 1 UUAGCGGAUAUCUCGUUGU------UUCUGGAAGAGAAUCUGCCCGACGAGCUGGUGUCCUCAAACAGCGGCUGGUCGGAUCAGCUGAGUGGCGG---CGGC ...((((((.((((.....------........))))))))))(((((.(((((.(((......))).))))).)))))....((((.....)))---)... ( -37.12) >consensus UUAGCGGAUAUCUC_UACU______UUCUGGAAGAGAAUCUGCCCGAUGAGCUGGUGUCCUCGAACAGCGGCUGGUCGGAUCAGCUGAACGGCGG___CGGC .((((.(((.((((...................))))......(((((.(((((.(((......))).))))).)))))))).))))............... (-25.63 = -25.19 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:16 2006