Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,091,604 – 1,091,707 |
Length | 103 |
Max. P | 0.681910 |
Location | 1,091,604 – 1,091,707 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -24.81 |
Energy contribution | -24.70 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.90 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1091604 103 - 22224390 UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGUAGAAGUUGGGGAAGGAGUAGAAAAGCAGGAGGAGGUUGCGAAUCGGAACGAAUCGGAA ..((..(((..(((((((((..(((((((.....((((((.(.......))))))).....((......))...))))))).....))))))))).))).)). ( -24.70) >DroSec_CAF1 13139 98 - 1 UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGCAGAAGUUGGGGAAGGAGUA-----GCAGGAGGAGGUUGCGAAUCGGAACAUACCGGAA ..((.((...((((((((((..(((((((..((..(((...((((....))))......)))..-----))...))))))).....)))))))))).)).)). ( -29.10) >DroSim_CAF1 13212 98 - 1 UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGCAGAAGUUGGGGAAGGAGUA-----GCAGGAGGAGGUUGCGAAUCGGAACAUACCGGAA ..((.((...((((((((((..(((((((..((..(((...((((....))))......)))..-----))...))))))).....)))))))))).)).)). ( -29.10) >consensus UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGCAGAAGUUGGGGAAGGAGUA_____GCAGGAGGAGGUUGCGAAUCGGAACAUACCGGAA ..((.((...((((((((((..(((((((.....((((((.(.......))))))).....((......))...))))))).....)))))))))).)).)). (-24.81 = -24.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:27 2006