| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,506,847 – 9,506,962 |
| Length | 115 |
| Max. P | 0.989186 |
| Location | 9,506,847 – 9,506,962 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.07 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -12.39 |
| Energy contribution | -13.83 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.41 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9506847 115 - 22224390 CAAUAAAGACCAUAUCAUUAUCGAGCCCC--CUUAAUCUGG-AUGUUUAUCUGUGCUGCAAAUCCCCAGCAUAAAGCCUGCAGGUGGGGGGG--ACUCGAAAAUCUUUAGCACUUCAAAA ...((((((........((.(((((((((--((((.((((.-(.((((...(((((((........))))))))))).).))))))))))))--.))))).))))))))........... ( -37.60) >DroSec_CAF1 2441 111 - 1 CAAUAAAGACCAUAUCAU-AUCGAGCCCC--CUUAAUCUGU-AUGCUUAUCUGUGCUGCAAAUCCCCAGCAUAAAGCCUGCAGGUGG---GG--ACUCGAAAAUCUCUAGCUCUUCAAAA ..................-.(((((.(((--(...((((((-(.((((...(((((((........))))))))))).)))))))))---))--.))))).................... ( -34.60) >DroSim_CAF1 1368 111 - 1 CAAUAAAGACCAUAUCAU-AUCGAGCCCC--CUUAAUCUGU-AUGCUUAUCUGUGCUGCAAAUCCCCAGCAUAAAGCCUGCAGGUGG---GG--ACUCGAAAAUCUCUAGCUCUUCAAAA ..................-.(((((.(((--(...((((((-(.((((...(((((((........))))))))))).)))))))))---))--.))))).................... ( -34.60) >DroEre_CAF1 2369 102 - 1 CACUAUCAAUCAUAUCAU-AUCAGUC----CUUUAAUCUGG-GGGCUUAUCGGCGCUGCAAAUGCCCAGCAUAAAACCUGCAGGUGG---GGAAAGUCGAAAAUCUGUAAC--------- ..................-...((((----(((......))-)))))..(((((((((........))))......((((....)))---)....)))))...........--------- ( -21.50) >DroYak_CAF1 2409 107 - 1 -------AUCCGUAUCAU-AUCGGGCUCCAUUUUAAUCUACUAGACUUAUCGUUGCUGCAAAUCCCCAGCAGAAAACCCGCAGGUGG---GG--AGUCCAAAAUCUGUAGCUCUUCAAAA -------...........-...(((((((........(((((.(........((((((........))))))........).)))))---))--)))))..................... ( -22.59) >consensus CAAUAAAGACCAUAUCAU_AUCGAGCCCC__CUUAAUCUGG_AUGCUUAUCUGUGCUGCAAAUCCCCAGCAUAAAGCCUGCAGGUGG___GG__ACUCGAAAAUCUCUAGCUCUUCAAAA ....................(((((..........((((((...((((...(((((((........)))))))))))..))))))..........))))).................... (-12.39 = -13.83 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:08 2006