Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,494,674 – 9,494,772 |
Length | 98 |
Max. P | 0.893567 |
Location | 9,494,674 – 9,494,772 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.22 |
Mean single sequence MFE | -18.74 |
Consensus MFE | -16.20 |
Energy contribution | -16.64 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.86 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9494674 98 + 22224390 AAA-UGCGAGGCGAAAUA-AAAAGAAACCAGCUGUUUGAUUACGCGGCUAAAAAAGCUAAUGGAACAUGAUUUCAUACUACUAAAAACAACAGCUGCUUU ...-..............-.........((((((((.(.......((((.....)))).((((((.....))))))...........))))))))).... ( -15.80) >DroSec_CAF1 38113 99 + 1 AAAUUGCGAGGUGAAAAA-AACAGAAACCAGCUGUUGGAUUACGCGGCUAAAAAAGCUAAUGGAACAUGAUUUCAUACUACCAAAAACAGCAACUGUUUU ................((-(((((......((((((((.......((((.....)))).((((((.....))))))....)))...)))))..))))))) ( -17.50) >DroSim_CAF1 38007 98 + 1 AAA-UGCGAGGUGGAAAA-AACAGAAACCAGCUGUUGGAUUACGCGGCUAAAAAAGCUAAUGGAACAUGAUUUCAUACUACCAAAAACAACAACUGCUUU ...-.....(((((....-..........((((((........))))))..........((((((.....)))))).))))).................. ( -15.90) >DroEre_CAF1 38161 99 + 1 AAA-UGCUAGGCGAAAAACAAAAGAAACCAGCUGUUGGAUUACGAGGCUAAAAAAGCUAAUGGAACAUGAUUUCAUACUAUCAAAACCAACAGCUGCCAU ...-.....(((...........(....)(((((((((.......((((.....)))).((((((.....))))))..........)))))))))))).. ( -24.10) >DroYak_CAF1 38721 99 + 1 AAA-UGCGAGGCGAAAAACAAAAGAAACCAGCUGUUGGAUUACGAGGCUAAAAAAGCUAAUGGAACAUGAUUUCAUACUACCAAAGUCAACAGCUGCUAU ...-........................((((((((((.......((((.....))))..(((...(((....)))....)))...)))))))))).... ( -20.40) >consensus AAA_UGCGAGGCGAAAAA_AAAAGAAACCAGCUGUUGGAUUACGCGGCUAAAAAAGCUAAUGGAACAUGAUUUCAUACUACCAAAAACAACAGCUGCUUU ............................(((((((((........((((.....)))).((((((.....))))))...........))))))))).... (-16.20 = -16.64 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:04 2006