Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,494,076 – 9,494,188 |
Length | 112 |
Max. P | 0.883965 |
Location | 9,494,076 – 9,494,188 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -24.46 |
Energy contribution | -24.74 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.46 |
Structure conservation index | 0.88 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883965 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9494076 112 - 22224390 GGGGUCAGCUCUUCUCCGCUGCGCUUGUCAUCCCACAAACCCCAACAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUAAGCGGAAGCAUAAUAAAUGCGCUUUAGC (((((((((........))))...((((......)))))))))..........((..((((((....))))))...(((((((..((....))......)))))))....)) ( -29.50) >DroSec_CAF1 37515 112 - 1 GGGGUCAGCUCUUCUCCGCUCCGCUUGUCAUCCCACAAACCCCACCAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC (((((.(((........)))....((((......)))))))))..........((..((((((....))))))...(((((((..((....))......)))))))....)) ( -26.80) >DroSim_CAF1 37414 112 - 1 GGGGUCAGCUCUUCUCCGCUCCGCUUGUCAUCCCACAAACCCCACCAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC (((((.(((........)))....((((......)))))))))..........((..((((((....))))))...(((((((..((....))......)))))))....)) ( -26.80) >DroEre_CAF1 37546 112 - 1 GGGGUCAGCUCUUCUCCGCUACGCUUCUCAUCCCAUGAACCCCACCAUAUCACUCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC (((((.(((........))).......((((...)))))))))..............((((((....))))))...(((((((..((....))......)))))))...... ( -26.80) >DroYak_CAF1 38130 112 - 1 GGGGUCAGGUCUUUGCCGCUCCGCUUCUCAUCCCAUAAACCCCACCAUAUCACUCCCCGCAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAGUAAAUGCGCUUUAGC (((((..(((....)))((...))..............)))))..............((((((....))))))...(((((((..((....))......)))))))...... ( -28.50) >consensus GGGGUCAGCUCUUCUCCGCUCCGCUUGUCAUCCCACAAACCCCACCAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC (((((.(((........)))....((((......)))))))))..............((((((....))))))...(((((((..((....))......)))))))...... (-24.46 = -24.74 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:03 2006