Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,493,808 – 9,493,925 |
Length | 117 |
Max. P | 0.521813 |
Location | 9,493,808 – 9,493,925 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.72 |
Mean single sequence MFE | -35.94 |
Consensus MFE | -28.32 |
Energy contribution | -29.40 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.40 |
Structure conservation index | 0.79 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9493808 117 - 22224390 UCGAAAGGAGCCGGAAUGAAGCCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUU-GCUGAAUGGCUA ((....))((((((((((..(((.(((((...(((....)))..)))))..((((((.....)))))).))).))))).........((((....))))......-......))))). ( -35.60) >DroSec_CAF1 37247 117 - 1 UCGAAAGGAGCCGGAAUGAAGCCAUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUC-GCUGAAUGGCUA ((....))((((((((((..(((((((((...(((....)))..)))))..((((((.....)))))))))).))))).......(.(((((........)))))-.)....))))). ( -37.80) >DroSim_CAF1 37146 117 - 1 UCGAAAGGAGCCGGAAUGAAGCCAUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUC-GCUGAAUGGCUA ((....))((((((((((..(((((((((...(((....)))..)))))..((((((.....)))))))))).))))).......(.(((((........)))))-.)....))))). ( -37.80) >DroEre_CAF1 37290 105 - 1 UCGAAAGGAGCCAGAAUGAAGCCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACCCAAUGGGGGUUAAUAUCCGAGUGC------------- (((.....((((.(((((..(((.(((((...(((....)))..)))))..((((((.....)))))).))).))))).(((...)))))))......)))....------------- ( -33.10) >DroYak_CAF1 37856 118 - 1 UCGAAAGGAGGCGGAACGAAGUCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGCUCUGGUGCAUUCACUCAAUGGGGGUUAAUAUCCGAGCUCCGCUGAAUGGUUA ((....)).(((((((((....))).......(((....)))(((..((.(((((((.((((..((......)).....))))...))))))).))..)))..))))))......... ( -35.40) >consensus UCGAAAGGAGCCGGAAUGAAGCCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUC_GCUGAAUGGCUA ((....))((((((((((..(((((((((...(((....)))..)))))..((((((.....)))))))))).))))).........((((....)))).............))))). (-28.32 = -29.40 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:02 2006