Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,492,363 – 9,492,456 |
Length | 93 |
Max. P | 0.590562 |
Location | 9,492,363 – 9,492,456 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.03 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -7.88 |
Energy contribution | -7.52 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.20 |
Mean z-score | -2.27 |
Structure conservation index | 0.32 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9492363 93 - 22224390 AC--UUGGUGACCUGUUG-GCCUAGGCCAG---------------------CUACUAACUGCAAGAAAACAACAACAAACCCACAACCGACG-GAUGACACAUCAUAAACAAAUACCG ..--..((((..((((((-((....))).(---------------------(........))..........................))))-)((((....)))).......)))). ( -16.60) >DroSec_CAF1 35804 92 - 1 AC--UUGGUGACCUGUUGGGCCUAGGCCAG---------------------CUACUAACUGCAAGUAAACA---ACAAACCCACAACCGACGGGAUGACACAUCAUAAACAAACACUG ..--..((((.((((((((((....))).(---------------------(........)).........---.............)))))))((((....)))).......)))). ( -22.20) >DroSim_CAF1 35703 90 - 1 AC--UUGGUGACCUGUUG-GCCUAGGCCAG---------------------CUACUAACUGCAAGUAAACA---ACAAACCCACAACCGACG-GAUGACACAUCAUAAACAAACACUG ..--..((((.((.((((-((....)))))---------------------)((((.......))))....---.................)-)((((....)))).......)))). ( -17.30) >DroEre_CAF1 35890 90 - 1 AC--UUGGUGACCUGUUG-GCCUAGGCCAG---------------------CUACCAACUGCAAGUAAACA---ACAAACCGACAACCGACG-GAUGACACAUCAUAAACAAAUGCCG ..--((((((....((((-((....)))))---------------------)))))))..(((........---.....(((........))-)((((....)))).......))).. ( -20.50) >DroYak_CAF1 36301 111 - 1 AC--UUGGUGACCUGUUG-GCCUAGGCCAGCUACUUGCUACCAGCUACCAGCUACCGACUGCAAGUAAACA---ACAAACCCACAAACGACG-GAUGACACAUCAUAAACAAACACCG ..--..((((.((.((((-((....))))))(((((((....(((.....))).......)))))))....---.................)-)((((....)))).......)))). ( -29.10) >DroAna_CAF1 45481 84 - 1 UCUCUCGGUGACCUGUUG-GCCUAGGCCCG---------------------GGUCUGGGUCCGGGCCCGGG---CCAGACCAGC--UCGAUAGGA-------UGGUAAACAAAUACCA (((.(((....)..((((-(.((.((((((---------------------((((((....))))))))))---)))).)))))--..)).))).-------(((((......))))) ( -43.30) >consensus AC__UUGGUGACCUGUUG_GCCUAGGCCAG_____________________CUACUAACUGCAAGUAAACA___ACAAACCCACAACCGACG_GAUGACACAUCAUAAACAAACACCG ......((((...(((((.((....))).................................................................((((...))))...))))..)))). ( -7.88 = -7.52 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:01 2006