Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,489,997 – 9,490,089 |
Length | 92 |
Max. P | 0.893903 |
Location | 9,489,997 – 9,490,089 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.68 |
Mean single sequence MFE | -22.47 |
Consensus MFE | -21.21 |
Energy contribution | -21.01 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.30 |
Structure conservation index | 0.94 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9489997 92 - 22224390 GCACAUCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAAUUGCACAAAUUUACGAUCCGCAGGCUCUGAACUAGUUCCGCU ((......(((((....)))))((((.((((((((((..-----...((..((((((.....)))))).))...)))))))))).....)))).)). ( -24.80) >DroSec_CAF1 33455 92 - 1 GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU ....(((.(((((....)))))((((.((((((((((((-----(........................)))..)))))))))).....)))).))) ( -22.66) >DroSim_CAF1 33335 92 - 1 GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU ....(((.(((((....)))))((((.((((((((((((-----(........................)))..)))))))))).....)))).))) ( -22.66) >DroEre_CAF1 33506 97 - 1 GCACAGCAUCACGAAGUCGUGAGAACACAGAGUAUGCAUCACAUCACUCCAUAAACUGCACAAAUUUACGAUUCGCAGGCUCUGAACUAGUUCGGUU ....(((.(((((....))))).......(((((((.....))).))))......((((...............)))))))(((((....))))).. ( -19.56) >DroYak_CAF1 33872 92 - 1 GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU ....(((.(((((....)))))((((.((((((((((((-----(........................)))..)))))))))).....)))).))) ( -22.66) >consensus GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU_____CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU ((......(((((....)))))((((.((((((((((.....................................)))))))))).....)))).)). (-21.21 = -21.01 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006