Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,487,448 – 9,487,549 |
Length | 101 |
Max. P | 0.993844 |
Location | 9,487,448 – 9,487,549 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.78 |
Mean single sequence MFE | -46.92 |
Consensus MFE | -39.88 |
Energy contribution | -40.24 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -2.24 |
Structure conservation index | 0.85 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9487448 101 - 22224390 GGGCGGUGGUCCUGAGCGUGGGCGUGGCAGUCGCAGCAUGCCCUGCGUGGGCGGAAGCAUUCGUCUGCCCACGCGAAUGAAUGAA-AGUAACUAC-GCUGGCU ((((....))))..((((((((((((((....))..)))))))((((((((((((........))))))))))))..........-.......))-))).... ( -46.10) >DroSec_CAF1 30609 100 - 1 GGGCGGUGGUCCUGAGUGUGGGCGUGGCAGUCGCAGCAUGCCC-GCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUGAAUGAA-AGCAACUAC-GCCGGCU ((.(((((......((((((((((((((....))..)))))))-(((((((((((........)))))))))))...........-.)).))).)-)))).)) ( -46.90) >DroSim_CAF1 30517 100 - 1 GGGCGGUGGUCCUGAGCGUGGGCGUGGCAGUCGCAGCAUGACC-GCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUGAAUGAA-AGCAACUAC-GCCGGCU ((((....)))).....((.(((((((..((((.....)))).-(((((((((((........)))))))))))...........-.....))))-))).)). ( -44.40) >DroEre_CAF1 30655 102 - 1 GGGCGGUGGUCCUGAGGGUGGGCGUGGCAAUCGCAGCAUGCCCCGCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUAGAUGAA-AACAACUACUGCUGGCU .(((((((((..((...(.(((((((((....))..))))))))(((((((((((........)))))))))))...........-..))))))))))).... ( -47.70) >DroYak_CAF1 30891 103 - 1 GGGCGGUGGUCCUGCGGGUGGGCGUGGAAAUCGCAGCAUGCCGCGCGUGGGCGGAAGCAUUCGUCUGCCCACGCGAGCAGAUGAAAAACAACUACUGCUGGCG .(((((((((.((((.....((((((..........)))))).((((((((((((........)))))))))))).)))).((.....))))))))))).... ( -49.50) >consensus GGGCGGUGGUCCUGAGCGUGGGCGUGGCAGUCGCAGCAUGCCC_GCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUGAAUGAA_AGCAACUAC_GCUGGCU .(((.(((((.........(((((((((....))..))))))).(((((((((((........)))))))))))................))))).))).... (-39.88 = -40.24 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:56 2006