Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,485,892 – 9,485,985 |
Length | 93 |
Max. P | 0.584188 |
Location | 9,485,892 – 9,485,985 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 89.11 |
Mean single sequence MFE | -15.50 |
Consensus MFE | -15.10 |
Energy contribution | -15.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.17 |
Structure conservation index | 0.97 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9485892 93 + 22224390 AAAAAGAGCGCGCUUUAAAGCUUUGCUCUCUACGUGCUCUCU------CUCUCA-CACCAGGUUUAUGCCAUAAAUUUCAUGAAUUAUUAAAUAUCAACA ....((((((((......(((...))).....))))))))..------......-.....(((....))).............................. ( -15.10) >DroSec_CAF1 29033 93 + 1 AAAAAGAGCGCGCUUUAAAGCUUUGCUCUCUACGUGCUCUCU------CUCUCA-CACAAGGUUUAUGCCAUAAAUUUCAUGAAUUAUUAAAUAUCAACA ....((((((((......(((...))).....))))))))..------......-.....(((....))).............................. ( -15.10) >DroSim_CAF1 28950 99 + 1 AAAAAGAGCGCGCUUUAAAGCUUUGCUCUCUACGUGCUCUCUCUAUAUCUCUCA-CACCAGGUUUAUGCCAUAAAUUUCAUGAAUUAUUAAAUAUCAACA ....((((((((......(((...))).....))))))))..............-.....(((....))).............................. ( -15.10) >DroEre_CAF1 29136 95 + 1 AAAAAGAGCGCGCUUUUAAGCU-UGCUCUCUCCGUGCUCUCUUC----CUCGCCAUGCCAGGUUUAUGCCAUAAAUUACAUGAAUUAUUGAAUAUCAAGA ....((((((.(((....))).-))))))....(.((......(----((.((...)).))).....))).................(((.....))).. ( -15.70) >DroYak_CAF1 29308 93 + 1 AAAAAGAGCGCGCUUUAAAGCUUUGCUCUCUCCGUGCUCUCU------CUCACC-UACCAGGUUUAUGCCAUCAAUUUCUUGAAUUAUUGAAUACUAACA ....((((((((......(((...))).....))))))))..------......-.....(((....))).(((((..........)))))......... ( -16.50) >consensus AAAAAGAGCGCGCUUUAAAGCUUUGCUCUCUACGUGCUCUCU______CUCUCA_CACCAGGUUUAUGCCAUAAAUUUCAUGAAUUAUUAAAUAUCAACA ....((((((((......(((...))).....))))))))....................(((....))).............................. (-15.10 = -15.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:55 2006