Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,478,423 – 9,478,514 |
Length | 91 |
Max. P | 0.988023 |
Location | 9,478,423 – 9,478,514 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -15.48 |
Energy contribution | -16.73 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.15 |
Mean z-score | -1.81 |
Structure conservation index | 0.61 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9478423 91 + 22224390 ------------CAGUUGUCAUUCGACUCAAA-AAAUUGUGAUUUUAAUUGACUUCAUAUCGGACAUCCGGGGUAA--------------AACAUCGUAUCGGAUAUCCUAUACAAAA ------------.(((((.....)))))....-....(((((..((....))..)))))..(((.((((((.....--------------.........)))))).)))......... ( -15.04) >DroSec_CAF1 21651 117 + 1 AGUUGGGAAUGUCAAUUGUCAUGUGACUCGAAAAAGUUGUGAUU-UAAUUGACUUCAUGUCGGAUAUCCGGUGAAACAUCGAAGCAUCGAAGCAUCGUAUCGGACAUCCUAUACAAAA .(((((((..((((((((((((..((((......))))))))).-.)))))))....((((.((((..(((((.....((((....))))..))))))))).))))))))).)).... ( -32.90) >DroSim_CAF1 21867 109 + 1 AGUUGGGAAUGUCAAUUGUCAUGUGACUCGAAAAAGUUGUGAUU-UAAUUGACUUCAUGUCGGAUAUCCGGUGAAACAUCGA--------AGCAUCGUAUCGGACAUCCUAUACAAAA .(((((((..((((((((((((..((((......))))))))).-.)))))))....((((.((((..(((((.........--------..))))))))).))))))))).)).... ( -29.00) >DroEre_CAF1 21867 101 + 1 AGCUGUGAAAGUCAAUUGUCAUGUGGCUGAAAAAAAUUGUGACU-UAAUUGACUUCACAUCGGACAUCCUGUAAAAC----------------AUCCUAUCGGACAUCCUAUACGAAA .(.((((((.((((((((....((.((...........)).)).-)))))))))))))).)(((..(((.(((....----------------....))).)))..)))......... ( -24.40) >consensus AGUUGGGAAUGUCAAUUGUCAUGUGACUCAAAAAAAUUGUGAUU_UAAUUGACUUCAUAUCGGACAUCCGGUGAAAC_____________AGCAUCGUAUCGGACAUCCUAUACAAAA ..........((((((((((((..((((......)))))))))...)))))))........((((.(((((((........................))))))).))))......... (-15.48 = -16.73 + 1.25)
Location | 9,478,423 – 9,478,514 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -26.27 |
Consensus MFE | -15.92 |
Energy contribution | -17.11 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.14 |
Mean z-score | -2.37 |
Structure conservation index | 0.61 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.988023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9478423 91 - 22224390 UUUUGUAUAGGAUAUCCGAUACGAUGUU--------------UUACCCCGGAUGUCCGAUAUGAAGUCAAUUAAAAUCACAAUUU-UUUGAGUCGAAUGACAACUG------------ .((..(((.(((((((((..........--------------......))))))))).)))..))((((.((....(((......-..)))....)))))).....------------ ( -21.39) >DroSec_CAF1 21651 117 - 1 UUUUGUAUAGGAUGUCCGAUACGAUGCUUCGAUGCUUCGAUGUUUCACCGGAUAUCCGACAUGAAGUCAAUUA-AAUCACAACUUUUUCGAGUCACAUGACAAUUGACAUUCCCAACU ...(((...(((((((((....((.((.((((....)))).)).))..))))))))).))).((((((((((.-..((...........))(((....)))))))))).)))...... ( -31.00) >DroSim_CAF1 21867 109 - 1 UUUUGUAUAGGAUGUCCGAUACGAUGCU--------UCGAUGUUUCACCGGAUAUCCGACAUGAAGUCAAUUA-AAUCACAACUUUUUCGAGUCACAUGACAAUUGACAUUCCCAACU ...(((...(((((((((....((.((.--------.....)).))..))))))))).))).((((((((((.-..((...........))(((....)))))))))).)))...... ( -26.00) >DroEre_CAF1 21867 101 - 1 UUUCGUAUAGGAUGUCCGAUAGGAU----------------GUUUUACAGGAUGUCCGAUGUGAAGUCAAUUA-AGUCACAAUUUUUUUCAGCCACAUGACAAUUGACUUUCACAGCU .........((((((((..((((..----------------..))))..))))))))..(((((((((((((.-.((((..................))))))))))).))))))... ( -26.67) >consensus UUUUGUAUAGGAUGUCCGAUACGAUGCU_____________GUUUCACCGGAUAUCCGACAUGAAGUCAAUUA_AAUCACAACUUUUUCGAGUCACAUGACAAUUGACAUUCCCAACU .(((((((.(((((((((..............................))))))))).)))))))(((((((....((...........))(((....)))))))))).......... (-15.92 = -17.11 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:51 2006