Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,477,851 – 9,477,949 |
Length | 98 |
Max. P | 0.574545 |
Location | 9,477,851 – 9,477,949 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.81 |
Mean single sequence MFE | -17.57 |
Consensus MFE | -12.79 |
Energy contribution | -13.41 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.10 |
Mean z-score | -1.50 |
Structure conservation index | 0.73 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9477851 98 + 22224390 UCUUUCCCGAUGUAGUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAUACAUAUGUAUGUACAUCAACCAUGCCAUCAUUAUUUAGUUUAUUGGCCU ......((((.(((....)))...)))).....(((....)))((((((((....)))))))).........((((................)))).. ( -20.49) >DroSec_CAF1 21071 94 + 1 UCUUUCCCGAUGUAUUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAU----AUGCAUGUAUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCU ........(((((((.((((.....))))((((((((......))))))----))....)))))))......((((................)))).. ( -17.09) >DroSim_CAF1 21284 94 + 1 UAUUUCCCGAUGUAUUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAU----AGGUAUGUAUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCU ......((((.(((....)))...)))).(((((((....)))))))..----.((.(((.....)))))..((((................)))).. ( -18.09) >DroYak_CAF1 20979 84 + 1 UCUUUCAAGCUAUAUU--UGCUUUUCGAAGUAUGUGCACACACGUAUAU------------AUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCC ......((((......--.))))...((.((((((((......))))))------------)).))......((((................)))).. ( -14.59) >consensus UCUUUCCCGAUGUAUUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAU____AUGUAUGUAUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCU ........((((((..((((.....))))(((((((....))))))).............))))))......((((................)))).. (-12.79 = -13.41 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:49 2006