| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,461,769 – 9,461,877 |
| Length | 108 |
| Max. P | 0.942308 |
| Location | 9,461,769 – 9,461,877 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.35 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -23.15 |
| Energy contribution | -23.32 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9461769 108 + 22224390 GCUCAAGACUUGGAGCGCACAACAAAAUGGGCUUUCUAUCGAAGGCUGCCUACAUCGUGUGGGCCGUGUAAGUAGAUCAAUCGCUAAUUGAACUUAGUAAUCUUAGUA ((((........))))((((.........(((((((....)))))))((((((.....)))))).)))).......(((((.....)))))(((.((....)).))). ( -29.70) >DroVir_CAF1 11551 93 + 1 GGUCAAGGCUCUGGGCGUACUACAAAAUGGGCUUUCUAUCCAAGGCCGCCUACAUUGUGUGGGCCGUGUAAGUAACUAACC--------UAGCCCAAUAUC------- ......((((..((...(((((((.....((((((......))))))((((((.....))))))..))).)))).....))--------.)))).......------- ( -28.50) >DroSim_CAF1 3043 108 + 1 GCUCAAGACUUGGGACGCACAACAAAAUGGGCUUUCUAUCGAAGGCUGCCUACAUCGUGUGGGCUGUGUAAGUAGAUCAAUCGCUAACCGAACCUCGUAAUCUUAGUA (((.((((..((((..(((((........(((((((....)))))))((((((.....)))))))))))...........(((.....)))..))))...))))))). ( -29.50) >DroEre_CAF1 7187 88 + 1 GCUCAAGGCAUUGGGCGCACAACAAAAUGGGCUUUCUAUCGAAGGCUGCCUACAUCGUGUGGGCCGUGUAAGUA-------------UCGAACC-A------GUGCCG ......((((((((..((((.........(((((((....)))))))((((((.....)))))).)))).....-------------.....))-)------))))). ( -33.90) >DroYak_CAF1 7548 102 + 1 GCUCAAGGCUUUGGGCGCACAACAAAAUGGGCUUUCUAUCGAAGGCUGCCUACAUCGUGUGGGCCGUGUAAGUAGAUCAAUUGCUAAUCGAACCGA------UUGCCA ......(((.((((..((((.........(((((((....)))))))((((((.....)))))).)))).(((((.....))))).......))))------..))). ( -32.30) >DroMoj_CAF1 13054 89 + 1 GCUCAAGGCUCUGGGCGCACUACAAAAUGGGCUUUCUAUCAAAGGCCGCCUACAUCGUGUGGGCCGUGUAAGUAGCUAAAC------------CUGGAAGC------- .......((((..((.((((((((.....((((((......))))))((((((.....))))))..))).))).))....)------------)..).)))------- ( -28.10) >consensus GCUCAAGGCUUUGGGCGCACAACAAAAUGGGCUUUCUAUCGAAGGCUGCCUACAUCGUGUGGGCCGUGUAAGUAGAUCAAU______UCGAACCUAGUA___UU___A ((((........))))((((.........(((((((....)))))))((((((.....)))))).))))....................................... (-23.15 = -23.32 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:48 2006