Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,088,672 – 1,088,768 |
Length | 96 |
Max. P | 0.931001 |
Location | 1,088,672 – 1,088,768 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -15.56 |
Energy contribution | -17.42 |
Covariance contribution | 1.86 |
Combinations/Pair | 1.04 |
Mean z-score | -2.38 |
Structure conservation index | 0.69 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1088672 96 - 22224390 ACCGAUACACUUCUCGGGCCUGCAAAAGGUCUAUAUGUUUUUGUAUUUCAAACCAUUAUCGAAGAUUUGCAACU---CUGCUAAAAAUAGUAGUAGUAA .((((........))))...((((((...((.(((....((((.....))))....))).))...))))))(((---((((((....)))))).))).. ( -19.70) >DroSec_CAF1 10296 82 - 1 ACCGAUACAGUUCUUGGACCUGCAA-AGGUCUAUAUGCCAUUGUAUUUUAAACUAUUAUCGAAGAUUAGC----------------AUGGUAGUAGUAA ...((((((((...(((((((....-)))))))......))))))))....((((((((((.........----------------.)))))))))).. ( -21.20) >DroSim_CAF1 9318 98 - 1 ACCGAUACAGUUCUUGGACCUGCAAAAGGUCUAUAUGCUUUUGUAUUUUAAACUAUUAUCGAAGAUUUGCAACUGCUCUGC-AAAAAUGGUAGUAGUAA ...((((((((...(((((((.....)))))))...))...))))))....((((((((((....((((((.......)))-)))..)))))))))).. ( -26.90) >consensus ACCGAUACAGUUCUUGGACCUGCAAAAGGUCUAUAUGCUUUUGUAUUUUAAACUAUUAUCGAAGAUUUGCAACU___CUGC_AAAAAUGGUAGUAGUAA ...(((((((..(.(((((((.....)))))))...)...)))))))....((((((((((.......(((.......)))......)))))))))).. (-15.56 = -17.42 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:25 2006