Locus 353

Sequence ID X_DroMel_CAF1
Location 1,088,672 – 1,088,768
Length 96
Max. P 0.931001
window534

overview

Window 4

Location 1,088,672 – 1,088,768
Length 96
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 81.57
Mean single sequence MFE -22.60
Consensus MFE -15.56
Energy contribution -17.42
Covariance contribution 1.86
Combinations/Pair 1.04
Mean z-score -2.38
Structure conservation index 0.69
SVM decision value 1.21
SVM RNA-class probability 0.931001
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1088672 96 - 22224390
ACCGAUACACUUCUCGGGCCUGCAAAAGGUCUAUAUGUUUUUGUAUUUCAAACCAUUAUCGAAGAUUUGCAACU---CUGCUAAAAAUAGUAGUAGUAA
.((((........))))...((((((...((.(((....((((.....))))....))).))...))))))(((---((((((....)))))).))).. ( -19.70)
>DroSec_CAF1 10296 82 - 1
ACCGAUACAGUUCUUGGACCUGCAA-AGGUCUAUAUGCCAUUGUAUUUUAAACUAUUAUCGAAGAUUAGC----------------AUGGUAGUAGUAA
...((((((((...(((((((....-)))))))......))))))))....((((((((((.........----------------.)))))))))).. ( -21.20)
>DroSim_CAF1 9318 98 - 1
ACCGAUACAGUUCUUGGACCUGCAAAAGGUCUAUAUGCUUUUGUAUUUUAAACUAUUAUCGAAGAUUUGCAACUGCUCUGC-AAAAAUGGUAGUAGUAA
...((((((((...(((((((.....)))))))...))...))))))....((((((((((....((((((.......)))-)))..)))))))))).. ( -26.90)
>consensus
ACCGAUACAGUUCUUGGACCUGCAAAAGGUCUAUAUGCUUUUGUAUUUUAAACUAUUAUCGAAGAUUUGCAACU___CUGC_AAAAAUGGUAGUAGUAA
...(((((((..(.(((((((.....)))))))...)...)))))))....((((((((((.......(((.......)))......)))))))))).. (-15.56 = -17.42 +   1.86) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:25 2006