Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,444,466 – 9,444,565 |
Length | 99 |
Max. P | 0.724091 |
Location | 9,444,466 – 9,444,565 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -27.12 |
Energy contribution | -26.88 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.05 |
Mean z-score | -1.53 |
Structure conservation index | 0.90 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9444466 99 + 22224390 UGGAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAUAUA----GAGAUACGCAGUUUAACUGCG- ......((((..((.((((.((((((((((........)))).....((((.(((.....)))))))))))))((...----...)))))).))..))))...- ( -28.20) >DroSec_CAF1 25237 99 + 1 UGGAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGUCAGGCGACAGAUA----GAGAUACGCAGUUUUACUGCG- .......(((((..(((((((((...))))))...............((((.(((.....))))))).))).))))).----......(((((.....)))))- ( -27.00) >DroEre_CAF1 26764 103 + 1 UGGAAAAGUUUGGCCGCCUCGUCGUCGAUGUCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGUCAGGCGACAGUUACGCAGAGAUACGCAGUUCUACUGCG- ....................(((((((((((......))))).....((((.(((.....))))))))))))).....((((((((........))).)))))- ( -28.60) >DroYak_CAF1 26376 104 + 1 UGGAAAAGUUCGGCCGCUUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUACGCGGAGAUACGCAGUUUUACUGCGA .........((..((((.((((((((((((........)))).....((((.(((.....))))))))))))).))...)))).))..(((((.....))))). ( -36.90) >consensus UGGAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUA____GAGAUACGCAGUUUUACUGCG_ ....................((((((((((........)))).....((((.(((.....)))))))))))))...............(((((.....))))). (-27.12 = -26.88 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:35 2006